1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaggaaactcatcaactagagttatatgttccattcgtacgttttctttattcacaactctaccttttctgcagACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCTGATTTCAACTCATACATAAAGTGCAACTTTGTGATTTCGG
species | Arabidopsis thaliana |
transcript | AT3G51130.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAG ACTCACAAAAGTTAAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGEST: gi|86077729|gb|DR373486.1|DR373486
genomic: ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaact ... ttttctgcagACTCACAAA-GTTAAAAA-GTTTGTTCTTCACACCAACTATCCGGGTCATG
EST: ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAG ACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCTEST: gi|164121570|gb|ES014816.1|ES014816
genomic: ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaact ... ttttctgcagACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCT
EST: ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAG ACTCAACAAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGEST: gi|125041928|gb|EL114197.1|EL114197
genomic: ACTTTTACAACTATTTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaact ... ttttctgcagACTCA-CAAA-GTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATG
EST: TTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAG ACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCT
genomic: TTTACTCGTGGTTTGGACATCCTGTTTGATGGCGAGgtaggaaact ... ttttctgcagACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCT
agttatatgttccattcgtacgttttctttattcacaactctaccttttctgcagACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCTGATTTCAACTCATACATAAAGTGCAACTTTGTGATTTCGG
ctctaccttttctgc CT-rich tract
ttttctttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaaactcatcaactagagttatatgttccattcgtacgttttctttattcacaactctaccttttctgcagACTCACAAAGTTAAAAAGTTTGTTCTTCACACCAACTATCCGGGTCATGCTGATTTCAACTCATACATAAAGTGCAACTTTGTGATTTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT