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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accagctaggacatagactaaaaccttctttagaacttgaaccaactgttttcgaagaacaattatacactttctgagttcacttttgattttgaaacagCTATACAAAGCCCGGGAAGAGAAGTACTTGCTGGATATACAGAGAGTTAACGGTCCGCAGTTTCTCTTCTTGGATCTATGCGCCGCCTTTCTTACAGAGC

Basic information

species Arabidopsis thaliana
transcript AT3G29160.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G29160.3 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA08G26180.1 (Glycine max), 3'ss of exon 10
-------------------------------accagcta--ggacatagactaaaaccttctttagaacttgaaccaactgttttcgaagaacaattata---cactttctgagttcacttttgattttga----------aacagCTATACAAAGCCCGGGAAGAGAAGTACTTGCTGGATATACAGAGAGTTAACGGTCCGCAGTTTCTCTTCTTGGATCTATGCGCCGCCTTTCTTACAGAGC
                               ||||  ||   ||||  || ||    | |||| | ||  | |  |  ||||| |    |   | || ||   |  ||||     |    | | ||  | |          ||||||| ||||||||||||||||| |||||  |||| ||| | || || ||  | ||||| |||||||| |||||||||||||| || || || ||| || |||
gtaatttacctttagaaccataatgtttataaccaattataagacacggatta---tcctcttaataaactaattcttctgttattattgggtagttgtaattctttttccagaatattctctaatacttacattcacttcaacagCTTTACAAAGCCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTATGTGCTGCTTTCCTTGCACAGC

upper sequence: AT3G29160.3 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA18G49770.2 (Glycine max), 3'ss of exon 10
accagctaggacatagactaaaaccttctttagaacttgaaccaactgttttcgaagaacaattata--cactttctgagttcacttttgattttga----------aacagCTATACAAAGCCCGGGAAGAGAAGTACTTGCTGGATATACAGAGAGTTAACGGTCCGCAGTTTCTCTTCTTGGATCTATGCGCCGCCTTTCTTACAGAGC
            |||    | |    |||  | ||  | |  |  ||||| |    |   | |||||     ||||     |    | | ||| | |          ||||||| |||||| |||||||||| |||||  |||| ||| | || || ||  | ||||| |||||||| |||||||||||||| || || || ||| || |||
-----------tataagacaga-ttgtctcaataaactaattcttctgttattattgggtagttataattcttttccagaatattctctaattcttacagtcacatcaacagCTTTACAAAACCCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGGTGCAGGGTCCACAGTTTCTTTTCTTGGATCTATGTGCTGCTTTCCTTGCACAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttttcgaagaacaattatacactttctgagttcacttttgattttgaaacagCTATACAAAGCCCGGGAAGAGAAGTACTTGCTGGATATACAGAGAGTTAACGGTCCGCAGTTTCTCTTCTTGGATCTATGCGCCGCCTTTCTTACAGAGC
                                      ttttgat  putative branch site (score: 4)
                                      ttttgattttgaaa  TA-rich tract