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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcataggattgactgacatgcaacacacttctcaatttattgtctttgcatcccagacccctttcagtatctaatctgagctgcaacgtttgtcatgttttctatggcctcttattctctttctcttatttgctgttgtagAACAGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAGACGTTTGAACCTTTCCTTCATCAG

Basic information

species Arabidopsis thaliana
transcript AT3G19720.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G19720.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA08G07990.2 (Glycine max), 3'ss of exon 8
gtatcataggattgactgacatgcaacacacttctcaatttattgtctttgcatcccagacccctttcagtatctaatctgagctgcaacgtttgtca-tgttttctatggcctcttattctctttctcttatttgctgttgtagAACAGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAGACGTTTGAACCTTTCCTTCATCAG
                                    ||||   ||| ||  |    ||    | | |  |||| | | ||   |      || |   | |  ||  ||     |   ||  | ||| | ||   |        || || |||||||| || || ||||||||||||||||| || ||||||||||| |||||||||
----------------------------------gtaattctgtgttttacctattca--ttcttgtgtgtattttacctattcattcttgtatactactaattgttaaatgttaaaataatttttattttgagtaac----cagGACTGCTTGTGTAATTGCTGTTGCGAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAG

upper sequence: AT3G19720.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA05G24890.1 (Glycine max), 3'ss of exon 6
gtatcataggattgactgacatgcaacacacttctcaatttattgtctttgcatcccagacccctttcagtatctaatctgagctgcaac-gtttgtcatgttttctatggcctcttattctctttctcttatttgctgttgtagAACAGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAGACGTTTGAACCTTTCCTTCATCAG
                                                  | |   | |     |||   |||  | |||    | | ||   |||| |  | || |||    |   ||  | ||| | ||   |        || || |||||||| || || ||||| ||||||||||| || ||||||||||| |||||||||
--------------------------------------------------gtaattctgtgtgttttacctattcattcttgtatactactaattgttaaatattatata--ttaaaataatttttattttgagtaac----cagGACTGCTTGTGTAATTGCTGTTGCAAAGGCTCGTGACACATTTGAACCTTTTCTTCATCAG

upper sequence: AT3G19720.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv12s0055g00490.t01 (Vitis vinifera), 3'ss of exon 10
gtatcataggattgactgacatgcaacacacttctcaatttattgtctttgcatcccagacccctttcagtatctaatctgagctgcaac-gtttgtcatgttttctatggcctcttattctctttctcttatttgctgttgtagAACAGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAGACGTTTGAACCTTTCCTTCATCAG
                                     ||  || | | |   | |  |  |     |  ||| | | |       | ||  |  |  | |  ||||||      ||| |   || | | ||   ||      |||||| |||||||| ||||| ||||| |||||||| || || ||||||||||| |||||||||
-----------------------------------gtatccatggacctca-agcttaatcaaaactttgtaacaacttcttatcgtaatagcattgctttatttctaattttccttgtctcctatttttttcctgaaaaattagAACTGCTTGTGTGATAGCTGTTGCAAAGGCTCGAGATACATTTGAACCTTTTCTTCATCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116411661|gb|EG454253.1|EG454253
EST:     GTAAATGCATGTGGAGTTGAGGATATTCATGATGGAACAAACTATTCCAG                         AACAGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAGACGTTTGAACCTTT
genomic: GTAAATGCATGTGGAGTTGAGGATATTCATGATGGAACAAACTATTCCAGgtatcatagg ... gctgttgtagAACAGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAGACGTTTGAACCTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtttgtcatgttttctatggcctcttattctctttctcttatttgctgttgtagAACAGCTTGTGTTATAGCAGTTGCGAAGGCTCGTGAGACGTTTGAACCTTTCCTTCATCAG
                     cctcttattctctttc  CT-rich tract
           ttttctat  TA-rich tract