1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtattaaagaaacaaattaaaatcttcaatcaagtttctttttgttttgttatatttctataagattattataaattttagagctttttataaatgtttgaacatattttatagGTATGGATGACCCGGGAAACGTTACTCTAGCTCAAGGACTACATGACACCACGAGAATCAAGTATTACAAAGATTACTTAACCAACCTTAAGAAAGCTAG
species | Arabidopsis thaliana |
transcript | AT3G18080.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACG GTATGGATGACCCGGGAAACGTTACTCEST: gi|124796191|gb|EH885870.1|EH885870
genomic: GTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACGgtattaaaga ... tattttatagGTATGGATGACCCGGGAAACGTTACTC
EST: TATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACG GTATGGATGACCCGGGAAACGTTACTCTAGCTCAAGGACTACAEST: gi|86076129|gb|DR371886.1|DR371886
genomic: TATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACGgtattaaaga ... tattttatagGTATGGATGACCCGGGAAACGTTACTCTAGCTCAAGGACTACA
EST: GTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACG GTATGGATGACCCGGGAAACGTTACTCTAGCTCAAGGACTACATGACACCAEST: gi|125212330|gb|EL227284.1|EL227284
genomic: GTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACGgtattaaaga ... tattttatagGTATGGATGACCCGGGAAACGTTACTCTAGCTCAAGGACTACATGACACCA
EST: GTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACG GTATGGATGACCCGGGAAACGTTAEST: gi|124903794|gb|EH977874.1|EH977874
genomic: GTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACGgtattaaaga ... tattttatagGTATGGATGACCCGGGAAACGTTA
EST: GTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACG GTATGGATGACCCGGGAAACGTTACTCTAGCTCAAGGACTACAEST: gi|116477432|gb|EG520024.1|EG520024
genomic: GTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACGgtattaaaga ... tattttatagGTATGGATGACCCGGGAAACGTTACTCTAGCTCAAGGACTACA
EST: GTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACG GTATGGATGACCCGGGAAACGT
genomic: GTATATGAAGGAACGTTACGGCAACCCTACTATGATCCTCTCTGAAAACGgtattaaaga ... tattttatagGTATGGATGACCCGGGAAACGT
ataagattattataaattttagagctttttataaatgtttgaacatattttatagGTATGGATGACCCGGGAAACGTTACTCTAGCTCAAGGACTACATGACACCACGAGAATCAAGTATTACAAAGATTACTTAACCAACCTTAAGAAAGCTAG
attattataaatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattaaagaaacaaattaaaatcttcaatcaagtttctttttgttttgttatatttctataagattattataaattttagagctttttataaatgtttgaacatattttatagGTATGGATGACCCGGGAAACGTTACTCTAGCTCAAGGACTACATGACACCACGAGAATCAAGTATTACAAAGATTACTTAACCAACCTTAAGAAAGCTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA