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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtcacttaaaagttccacctctttttcttaagccatgagggtgactttataatggaatttaactgtttgtgtgatttgcagATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G16480.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087838|gb|DR383597.1|DR383597
EST:     GCGCCAAAGCAGCAACAAAATCTGCGATTCTGATGAATCTGGAATCTCGG                         ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG
genomic: GCGCCAAAGCAGCAACAAAATCTGCGATTCTGATGAATCTGGAATCTCGGgtaggtcact ... tgatttgcagATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG
EST: gi|47829013|gb|CK118697.1|CK118697
EST:     GCGCCAAAGCAGCAACAAAATCTGCGATTCTGATGAATCTGGAATCTCGG                         ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG
genomic: GCGCCAAAGCAGCAACAAAATCTGCGATTCTGATGAATCTGGAATCTCGGgtaggtcact ... tgatttgcagATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG
EST: gi|164105565|gb|ES007188.1|ES007188
EST:     GCGATTCTGATGAATCTGGAATCTCGG                         ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG
genomic: GCGATTCTGATGAATCTGGAATCTCGGgtaggtcact ... tgatttgcagATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG
EST: gi|164067836|gb|ES023097.1|ES023097
EST:     CGCCAAAGCAGCAACAAAATCTGCGATTCTGATGAATCTGGAATCTCGG                         ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTT
genomic: CGCCAAAGCAGCAACAAAATCTGCGATTCTGATGAATCTGGAATCTCGGgtaggtcact ... tgatttgcagATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTT
EST: gi|125059636|gb|EL128313.1|EL128313
EST:     GCGCCAAAGCAGCAACAAAATCTGCGATTCTGATGAATCTGGAATCTCGG                         ATGATTGCAGCAG
genomic: GCGCCAAAGCAGCAACAAAATCTGCGATTCTGATGAATCTGGAATCTCGGgtaggtcact ... tgatttgcagATGATTGCAGCAG
EST: gi|164193055|gb|EL991371.1|EL991371
EST:     CTGGAATCTCGG                         ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG
genomic: CTGGAATCTCGGgtaggtcact ... tgatttgcagATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG
EST: gi|163988245|gb|EL997723.1|EL997723
EST:     CTGGAAATCTCGG                         ATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG
genomic: CTGG-AATCTCGGgtaggtcact ... tgatttgcagATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaagccatgagggtgactttataatggaatttaactgtttgtgtgatttgcagATGATTGCAGCAGAAGACATTGGTAGACAGATTCTTACTTACGGAGAGAG
                              atttaac  putative branch site (score: 3)
                   tttataatggaattta  TA-rich tract