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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaatcttgactgttgagattagtagacaacatgtaatgtgtgttttctatgataaattcaaaacaaaaggtgataatattttctaagttgtagcctgaatttgatgtatctgttaattccctaaatgtgtcatagGATCCTTTTCTAGGTCAGCTGTGAATAGCGAAAGTGAAGCCAAGACTGGTCTATCAGGCCTTGTAACAGGAATCATCATTGGATGTTCTCTACTGTTCTT

Basic information

species Arabidopsis thaliana
transcript AT3G12520.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G12520.1 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: LOC_Os09g06499.1 (Oryza sativa), 3'ss of exon 10
gtacgtaatcttgactgttgagattagtagacaacatgtaatgtgtgttttctatgataaattcaaaacaaaaggtgataatattttctaagttgtagcctgaatttgatgtatctgttaattccctaaatgtgtcatagGATCCTTTTCTAGGTCAGCTGTGAATAGCGAAAGTGAAGCCAAGACTGGTCTATCAGGCCTTGTAACAGGAATCATCATTGGATGTTCTCTACTGTTCTT
    ||||  |  |||    | |||| |     |    |  ||||  | ||      || |||    ||| ||  | | |||  ||  |    |  ||| | |  || |   | ||| | |||   ||    | |   ||| ||||||||||||||||||||||||   ||||||| ||| || ||||||||||| ||  |  |||  || || || |||||  || ||||  ||||  |
----gtaaaat--actaaccatattaatgagagatcatttctgtgcttatttatctgtatatt----acataa--ttaaaattcttaattcactagagc-taagcttcaaaaagctgattattttgtactattctttcagGTTCCTTTTCTAGGTCAGCTGTGAATCATGAAAGTGGAGCAAAAACTGGTCTATCTGGAATCATAATGGGCATAATAATTGGTGGTGCTCTCTTGTTTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaagttgtagcctgaatttgatgtatctgttaattccctaaatgtgtcatagGATCCTTTTCTAGGTCAGCTGTGAATAGCGAAAGTGAAGCCAAGACTGGTCTATCAGGCCTTGTAACAGGAATCATCATTGGATGTTCTCTACTGTTCTT
                                      ccctaaa  putative branch site (score: 3)
                 aatttgat  TA-rich tract