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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgattatctcatattcactgattttcttgggttttacacttgaacctagttgtataaagacttgaagatggccattacatcttcttttcttgatactttaagttcttattccctactaactattcagacgacttaacttcatctgatgcttgcagTATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGAGTTTAGAGAGGTACTCTTCTTTCAACAATGTGTTGTATAGAGTTTAGAGTCTCATTTTG

Basic information

species Arabidopsis thaliana
transcript AT3G11620.3
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G11620.3 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os01g72870.1 (Oryza sativa), 3'ss of exon 11
gtattgattatctcatattcactgattttcttgggttttacacttgaacctagttgtataaagacttgaagatggccattacatcttcttttcttgatactttaagttcttattccctactaactattcagacgacttaacttcatctgatgct-tgcagTATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGAGTTTAGAGAGGTACTCTTCTTTCAACAATGTGTTGTATAGAGTTTAGAGTCTCATTTTG
                                                             ||   |||   |  ||||  ||          |   |  | || |||  || |  ||   ||    | ||||       ||| ||   |   | ||||||| || || ||||| ||||||||||||||||||| | ||||||| |   ||                                                 
----------------------------------------------------------gtgagttctgagcttcaccatcccactaagagagat--gtcttatatgtttctactatctgaaaatgtctgagacattactcctttatggcaaattgtgcagTACCATACGATGCGTAATGTTCTCTTCATGGCAATGACAGAGTTCACGAAG-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124902575|gb|EH976655.1|EH976655
EST:     TACTGCTGTTCAAGCTACCTGCACTCACTTGAGGGCAG                         TATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGA
genomic: TACTGCTGTTCAAGCTACCTGCACTCACTTGA-GGCAGgtattgatta ... atgcttgcagTATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttcttattccctactaactattcagacgacttaacttcatctgatgcttgcagTATCACACCATGCGCAATGTTCTCTTCATGGCAAAGTCAGAGTTTAGAGAGGTACTCTTCTTTCAACAATGTGTTGTATAGAGTTTAGAGTCTCATTTTG
                taactatt  TA-rich tract