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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttcttactttgctatctcatcaatcatcattgtgggagtgtttgaaatatagtaacgacaatgtatgttcttgatatttacattgtctttatgatctcatttcagCCGTGCAAAAACTGTAAATGAGAACTTAAAAATGAGTGCTGCCCTTCTCTCACGGTTTGATTTAGTTTTCATATTACTTGACAAACCTGATGAGCTACTC

Basic information

species Arabidopsis thaliana
transcript AT3G09660.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G09660.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os05g38850.1 (Oryza sativa), 3'ss of exon 10
gtaattttcttactttgctatctcatcaatcatcattgtgggagtgtttgaaatatagtaacgacaatgtatgttcttgatatttacattgtctttatgatctcatttcagCCGTGCAAAAACTGTAAATGAGAACTTAAAAATGAGTGCTGCCCTTCTCTCACGGTTTGATTTAGTTTTCATATTACTTGACAAACCTGATGAGCTACTC
         |   | || ||| |  |   |  ||| |   |  |  |      || | ||   |   ||  ||||  ||  |  |  |  ||  | |  | ||  ||  ||||| |||||||| || |||||||| ||||| |||||||| ||||| ||||| |||||||| || |||||||| ||||||||||| || |||||  | || 
--------ttcgatatgatattttgtgtgttttcaattgagatgcttccctgctaga-tattaaatttgcgtgttactgccaacttaacagt--taagtacctttttgtagCCGAGCAAAAACAGTGAATGAGAATTTAAAGATGAGTGCCGCCCTCCTCTCTCGGTTTGACTTGGTTTTCATTTTACTTGACAAGCCAGATGAATTGCTG

upper sequence: AT3G09660.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G163658_T01 (Zea mays), 3'ss of exon 9
gtaattttcttactttgctatctcatcaatcatcattgtgggagtgtttgaaatatagtaacgacaatgtatgttcttgatatttacattgtctttatg-atc--tcatttcagCCGTGCAAAAACTGTAAATGAGAACTTAAAAATGAGTGCTGCCCTTCTCTCACGGTTTGATTTAGTTTTCATATTACTTGACAAACCTGATGAGCTACTC
    |||||||  ||| || | |  | | | |  |||   |       |||| | |  |  | |   |||||| | ||     |||     |||  ||  ||   |  || |||||| |||||||| || || |||||  ||||||||||||||||||| || || || ||||| || || || ||  |||||||||| || ||||||  ||| 
--gtttttcttgttttcctttgtttttactgaggattcaaga-----ctgaattctcatggctat--tgtatgctatt-----ttatgccatctaaatacattgattgttacagCCGAGCAAAAACAGTGAACGAGAATCTAAAAATGAGTGCTGCCCTCCTTTCTCGATTTGACTTGGTGTTTATTCTACTTGACAAGCCAGATGAGTCACTA

upper sequence: AT3G09660.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA19G36230.1 (Glycine max), 3'ss of exon 9
--------gtaattttcttactttgctatctcatcaatcatcattgtgggagtgtt-----tgaaatatagtaacg--------acaatgtatgttctt-gatat--ttacattgtct-ttatgatctca-tttcagCCGTGCAAAAACTGTAAATGAGAACTTAAAAATGAGTGCTGCCCTTCTCTCACGGTTTGATTTAGTTTTCATATTACTTGACAAACCTGATGAGCTACTC
         ||||||   ||  ||| |||   || | | |  ||      |  |       || ||  ||| |  |        ||||  | ||| |   | |||  ||| ||||     |||  ||  | || |||||| ||||||||||||||||| || || |||||||||||||| || || || || || ||||||                                    
gaggttctttaatttgtataaattg-tattctattatttactatcaaaataaagccagtcatgtaacgtagcagtgcttctttgacaaattttgtacaaagGTATCATTATATTGAAAGCTATATTCCAAATTGCAGCCGAGCAAAAACTGTAAATGAAAATTTGAAAATGAGTGCTGCTCTCCTGTCTCGTTTCGATTTA------------------------------------

upper sequence: AT3G09660.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv08s0040g03290.t01 (Vitis vinifera), 3'ss of exon 10
gtaattttcttactttgctatctcatcaatcatcattgtgggagtgtttgaaatatagtaacgacaatgtatgttc-ttgatatttacattgtct-ttatgatctcatttcagCCGTGCAAAAACTGTAAATGAGAACTTAAAAATGAGTGCTGCCCTTCTCTCACGGTTTGATTTAGTTTTCATATTACTTGACAAACCTGATGAGCTACTC
            | |  |||| || | ||| || ||| |     | |||      |  ||   |  || || | || || |||  |||    |   ||||  ||  ||| |||||||||||||||||| ||||| || || |||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| 
------------cataactat-tcctgaatgattattatttatttatttatttatttttattcatcatataggctccttcataaatactcattaaattatattcaaattgcagCCGTGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTTCTTTCACGGTTTGATTTGGTTTTCATATTACTTGATAAACCTGATGAGCTACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaacgacaatgtatgttcttgatatttacattgtctttatgatctcatttcagCCGTGCAAAAACTGTAAATGAGAACTTAAAAATGAGTGCTGCCCTTCTCTCACGGTTTGATTTAGTTTTCATATTACTTGACAAACCTGATGAGCTACTC
                                            tctcatttc  CT-rich tract
                    ttgatatttacatt  TA-rich tract