1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagctatattcaaatttttttcatatgctacttttgatactatttaatgacaatttaaattctgcagCAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATACAGCAAAAGATTGTTAAAGCCCTCAAAGAATATCGTAATCTTCACGCGGT
species | Arabidopsis thaliana |
transcript | AT3G07100.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GTATAGACAAGCAGACACTGGTTCCATTGTGTCTTTATATGTTAGATTAG CAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATACEST: gi|164226362|gb|ES034828.1|ES034828
genomic: GTATAGACAAGCAGACACTGGTTCCATTGTGTCTTTATATGCTAGATTAGgtaagctata ... aattctgcagCAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATAC
EST: GGTTCCATTGTGTCTTTATATGCTAGATTAG CAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATACEST: gi|125148798|gb|EL182281.1|EL182281
genomic: GGTTCCATTGTGTCTTTATATGCTAGATTAGgtaagctata ... aattctgcagCAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATAC
EST: TATGCTAGATTAG CAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATAC
genomic: TATGCTAGATTAGgtaagctata ... aattctgcagCAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATAC
aatttttttcatatgctacttttgatactatttaatgacaatttaaattctgcagCAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATACAGCAAAAGATTGTTAAAGCCCTCAAAGAATATCGTAATCTTCACGCGGT
atttaat putative branch site (score: 4)
ttttgatactatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctatattcaaatttttttcatatgctacttttgatactatttaatgacaatttaaattctgcagCAATTGAGAAATCTTTGTCCGCAAAATTGGATGATGCACGGAATGCAATACAGCAAAAGATTGTTAAAGCCCTCAAAGAATATCGTAATCTTCACGCGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA