Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaataaaagtaaaaattcttaaatttctaacaacgtctcttgatgaaaacatgcaaaatctgatatttagatcaatataaacccacagGAATGGAATTGGAAGCTTGCAACTTGAGAATGGTGAAAGGTCAGAGTCAGTCAGAGTCTAGTTTCACTGCCATGGTTATACTCCAGGTCTGGTCTGGTCT

Basic information

species Arabidopsis thaliana
transcript AT3G06720.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116430106|gb|EG472698.1|EG472698
EST:     GGAGGGAATCAAGCTCCAGTACCATCCGGAGGATTCAACTTCAGCTGAAG                         GAATGGAATTGGAAGCTTGCAACTTGAGAATGGTGAAAGGTCAGAGTCAGT
genomic: GGAGGGAATCAAGCTCCAGTACCATCCGGAGGATTCAACTTCAGCTGAAGgtaaataaaa ... aaacccacagGAATGGAATTGGAAGCTTGCAACTTGAGAATGGTGAAAGGTCAGAGTCAGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtctcttgatgaaaacatgcaaaatctgatatttagatcaatataaacccacagGAATGGAATTGGAAGCTTGCAACTTGAGAATGGTGAAAGGTCAGAGTCAGTCAGAGTCTAGTTTCACTGCCATGGTTATACTCCAGGTCTGGTCTGGTCT
                        atctgat  putative branch site (score: 4)
                     aaaatctgatatttag  TA-rich tract