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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttctatagatcataaaaacttgtggacttcaccctttaaagcatcattgtatcactctaatcgtttaatcttttattcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAG

Basic information

species Arabidopsis thaliana
transcript AT3G05910.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05910.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA10G28230.2 (Glycine max), 3'ss of exon 10
gttgttctatagatcataaaaacttgtggacttcaccctttaaagcatc---attgtatcactctaatcgtttaatcttttat-tcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAG
|| |||  |   || | | | |  | |  |||  |      |||  |||   | |  || | | |||    | | |    | | || |  |||||||||||| | || ||||| |  |   | || ||||||||||  ||  | ||||||||||||||||| ||||| || ||||||||||||||| | |||||
gtggtttgacgtatgagatatagctttc-actagaagtacaaaaatatcttcagtaaattagtgtaacaagtcatttccctgtatctaatacagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACGTCAGAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAG

upper sequence: AT3G05910.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA20G22210.1 (Glycine max), 3'ss of exon 10
gttgttctatagatcataaaaacttgtggacttcaccctt--taaagcatcattgtatcactctaatcgtttaatcttttat-tcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAG
|| |||  | | || | ||| |  | |       |   |   ||   | ||| |  || ||| |||    | | |    | | || |   ||||||||||| | || ||||| |  |   | || ||||||||||  ||    || |||||||||||||| ||||| || ||||||||||||||| | |||||
gtggtttgacatatgagaaatagctttcacaagaagtataaatatgtcttcagtaaattactgtaacaagtcatttccctgtatctaatgcagGATTCAGGAATCAAATGCTGAATGCTATTAAAGGCTTCTCAAGATCACCTCAAAATGGATTGTTCATAAATTCATGTTTTGCTCACTGCCAATCTGAGAG

upper sequence: AT3G05910.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA19G41240.1 (Glycine max), 3'ss of exon 10
-------gttgttctatagatcata---aaaacttgtggacttcaccctttaaagcatcattgtatcactctaatcgtttaatcttttattcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAG
       | |||   | | || | |   |  ||  ||||| |  |  ||| ||   ||||||   ||  |  |  ||||| |   | | |      |||||||||||| | || ||||| |  |   | ||   ||||||||  || |  |||||||| ||||| || |||||||| ||| ||||||||||||| |||||
gtaatatgatgtatgagatataacattgatgacaagtggaatgaagtcttcaataaatcattcagtcgattgagacgtttcactctcttt---gatacagGATTCAGGAATCATATGCTGAATGCTATTAAATACTTCTCAAGATCAAAGCAGAATGGCTTGTTTATTAATTCTTGTTTTTCTCACTGCCAAACTGAGAG

upper sequence: AT3G05910.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA03G38650.1 (Glycine max), 3'ss of exon 10
-------gttgttctatagatcata---aaaacttgtggacttcaccctttaaagcatcattgtatcactctaatcgtttaatcttttattcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAG
         |||   | | || | |   |  ||  ||||| |  |  | | ||   ||||||   |   |  |  ||||| |   | | ||     |||||||||||  | || ||||| |  |   | ||   ||||||||  || |  |||||||| ||||| || |||||||| ||| ||||||||||||| |||||
gtaataatatgtatgagaaataacattgatgacaagtggaatgaagtcatcaataaatcattcagttgattgagacgtttcactgtctctt--gatacagGATTCAGAAATCACATGCTGAATGCTATTAAATACTTCTCAAGATCAAAGCAGAATGGCTTGTTTATTAATTCTTGTTTTTCTCACTGCCAAACTGAGAG

upper sequence: AT3G05910.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv14s0060g00230.t01 (Vitis vinifera), 3'ss of exon 10
-------gttgttctatagatcataaaaacttgtggacttcaccctttaa-agcatcattgtatcactctaatcgtttaatcttttattcg--agaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAG
        |   | ||| ||   |  |   |  |      |||    | | |  || |||  ||| || || |    || |   | ||||    |||||||||||||| | || ||||| |  | | | || |||||||||||||||| ||| || || || ||||| ||||| || |||||||||||||| || |||||
taatataatctctttattgaagctctatgttcatattggccacataatgacattataatttaatctctttattgaagtatttcctaattctttggaacagGATTCAGGAATCAAATGCTGAATGCAATAAAAGGCTTCTCAATGTCTAAACAAAACGGGTTATTCATAAATTCATGTTTTGCTCACTGCCAGACAGAGAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116404724|gb|EG447316.1|EG447316
EST:     CAGACTAAACCATGGAAAATGTACTCCTGCACAGTTGAGATTCTTGCAAG                         GATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGAC
genomic: CAGACTAAACCATGGAAAATGTACTCCTGCACAGTTGAGATTCTTGCAAGgttgttctat ... tcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGAC
EST: gi|86077705|gb|DR373462.1|DR373462
EST:     CAGACTWAACCATGGAAAATGTACTCCTGCACAGTTGAGATTCTTGCAAG                         GATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGAC
genomic: CAGACTAAACCATGGAAAATGTACTCCTGCACAGTTGAGATTCTTGCAAGgttgttctat ... tcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGAC
EST: gi|125014318|gb|EL086587.1|EL086587
EST:     CAGACTAAACCATGGAAAATGTACTCCTGCACAGTTGAGATTCTTGCAAG                         GATTCAGGGAACAGATGCTTAGAGTAGT
genomic: CAGACTAAACCATGGAAAATGTACTCCTGCACAGTTGAGATTCTTGCAAGgttgttctat ... tcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGT
EST: gi|124751315|gb|EH841445.1|EH841445
EST:     GTACTCCTGCACAGTTGAGATTCTTGCAAG                         GATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGAC
genomic: GTACTCCTGCACAGTTGAGATTCTTGCAAGgttgttctat ... tcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGAC
EST: gi|124939749|gb|EL016264.1|EL016264
EST:     AGATTCTTGCAAG                         GATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGAC
genomic: AGATTCTTGCAAGgttgttctat ... tcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGAC
EST: gi|124974042|gb|EL047628.1|EL047628
EST:     CAGACTAAACCATGGAAAATGTACTCCTGCACAGTTGAGATTCTTGCAAG                         GATTCAGGGAACAGATGCTTAG
genomic: CAGACTAAACCATGGAAAATGTACTCCTGCACAGTTGAGATTCTTGCAAGgttgttctat ... tcgagaacagGATTCAGGGAACAGATGCTTAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctttaaagcatcattgtatcactctaatcgtttaatcttttattcgagaacagGATTCAGGGAACAGATGCTTAGAGTAGTCAAGGGCTTCTCAATGTCTAGACAGAATGGATTGTTCATCAATTCTTGCTTTGCTCACTGCCAAACCGAGAG
                                     tcttttattc  CT-rich tract
                                tttaatcttttatt  TA-rich tract