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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatctgatgatcgtagtgctatgttttgttctgttaaaacgacgttaccacgatagctttttattgtggcataacatgcagGTAAAAGAAGCAATCTTCAGAACTCTTATAACCAATGGTATGTTTGACAATACACATATCAGGTTGTCTCTAACTCGAGGCAAAAAG

Basic information

species Arabidopsis thaliana
transcript AT3G05190.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G05190.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA03G40000.2 (Glycine max), 3'ss of exon 10
----------------------------------------------------------------------------------------------gtaagcatctgatgatcgtagtgctatgttttgttctgttaaaacgacgttaccacgatagctttttattgtggcataacatgcagGTAAAAGAAGCAATCTTCAGAACTCTTATAACCAATGGTATGTTTGACAATACACATATCAGGTTGTCTCTAACTCGAGGCAAAAAG
                                                                                              ||||  | |  |  |    | |||||   | | ||| ||       | | || ||  |||     |  |  |   | ||  ||||| | || |||||||| ||||||||||| || |  ||||| |||||||||||| |||| ||| || | |||||||| ||||| ||||||
gtgagtctaagatgcatttagttcatctatcatgtgtcacttaaaacaccatttgtcatcccaataggctgtttgtcatatggtactgttttcagtaaaaagcaaagtacta-aatgctaa--tgtcttcagtcttgtttaggctatcatcataatgaatgttgttaaaaaaaattgcagATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGAAAAAAG

upper sequence: AT3G05190.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA19G42530.1 (Glycine max), 3'ss of exon 10
--------------------------------------------------------------------gtaagcatctgatgatcgtagtgcta-----tgttttgttctgttaaaacgacgttaccacgatagctttttattgtggcataacatgcagGTAAAAGAAGCAATCTTCAGAACTCTTATAACCAATGGTATGTTTGACAATACACATATCAGGTTGTCTCTAACTCGAGGCAAAAAG
                                                                    ||     | | |  | |  ||| |||     |  | | ||| ||       | |||| ||  |||  |   | ||||   | ||  | ||| | || |||||||| ||||||||||| || |  ||||| |||||||||||| |||| ||| || | |||||||| ||||| ||||||
gttcctacttgagatgaggtgagtctaagatgcattcagttcatctagcatgttagtcatatggtactgtttttctgtaaaaagcaaagtactaaatgctactgtcttcagtcttgtttaggttatcatcataa-tgaatgttgttcaaaaaattacagATTAAGGAAGCAATTTTCAGAACTCTAATTAGGAATGGCATGTTTGACAATTCACACATCCGGCTTTCTCTAACACGAGGGAAAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctgttaaaacgacgttaccacgatagctttttattgtggcataacatgcagGTAAAAGAAGCAATCTTCAGAACTCTTATAACCAATGGTATGTTTGACAATACACATATCAGGTTGTCTCTAACTCGAGGCAAAAAG
                                          gcataac  putative branch site (score: 3)
                               tttttattgt  TA-rich tract