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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaaacaatttcctcctgtaaatgctgctgttgaacctttttttattcagtgtggttaactttcacttgtctgcagGCCCCTGCATACAAGGAGCCGTCAATAACTGTCCCAGGAACTCACCCGATTGTGCAACATGAGATTTTGAATAATAAAAGGCAAATTTTAACCAAG

Basic information

species Arabidopsis thaliana
transcript AT3G05090.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164136218|gb|EL998207.1|EL998207
EST:     GTCTTTTAATAGGGCGAGGGTATCTTTGGAAGGACTAAATCCA                         GCCCCTGCATACAAGGAGCCGTCAATAACTGTCCCAGGAACTCACCCGATT
genomic: GTCTTTTAATAGGGCGAGGGTATCTTTGGAAGGACTAAATCCAgtaagcaaaa ... ttgtctgcagGCCCCTGCATACAAGGAGCCGTCAATAACTGTCCCAGGAACTCACCCGATT
EST: gi|125006105|gb|EL078374.1|EL078374
EST:     TTGTCTTTTAATAGGGCGAGGGTATCTTTGGAAGGACTAAATCCA                         GCCCCTGCATACAAGGAGCCGTCAATAACTGTCCCAGGAACTCACCCGATT
genomic: TTGTCTTTTAATAGGGCGAGGGTATCTTTGGAAGGACTAAATCCAgtaagcaaaa ... ttgtctgcagGCCCCTGCATACAAGGAGCCGTCAATAACTGTCCCAGGAACTCACCCGATT
EST: gi|116484027|gb|EG526619.1|EG526619
EST:     GGAATTTGTCTTTTAATAGGGCGAGGGTATCTTTGGAAGGACTAAATCCA                         GCCCCTGCATACAAGGAGCCGTCAATAACTGTCCCAGGAACTCACCCGATT
genomic: GGAATTTGTCTTTTAATAGGGCGAGGGTATCTTTGGAAGGACTAAATCCAgtaagcaaaa ... ttgtctgcagGCCCCTGCATACAAGGAGCCGTCAATAACTGTCCCAGGAACTCACCCGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctgctgttgaacctttttttattcagtgtggttaactttcacttgtctgcagGCCCCTGCATACAAGGAGCCGTCAATAACTGTCCCAGGAACTCACCCGATTGTGCAACATGAGATTTTGAATAATAAAAGGCAAATTTTAACCAAG
                                ggttaac  putative branch site (score: 3)
                                      ctttcactt  CT-rich tract
            aacctttttttatt  TA-rich tract