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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

atatccttttacatgacctagtctcagctttaattgctaatccctcttaataccatatttggctctacgaaaataaaggacgcagcattgcatagtttttcttgactttaagattctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGC

Basic information

species Arabidopsis thaliana
transcript AT3G04820.1
intron # 10
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116457912|gb|EG500504.1|EG500504
EST:     AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTG                         AAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
genomic: AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttt ... ttctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
EST: gi|116421231|gb|EG463823.1|EG463823
EST:     AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTG                         AAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
genomic: AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttt ... ttctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
EST: gi|116421229|gb|EG463821.1|EG463821
EST:     AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTG                         AAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAA
genomic: AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttt ... ttctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAA
EST: gi|116457905|gb|EG500497.1|EG500497
EST:     AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAAACAAACTG                         AAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
genomic: AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttt ... ttctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
EST: gi|116457910|gb|EG500502.1|EG500502
EST:     AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTG                         AAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
genomic: AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttt ... ttctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
EST: gi|116457913|gb|EG500505.1|EG500505
EST:     AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTG                         AAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
genomic: AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttt ... ttctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
EST: gi|116457903|gb|EG500495.1|EG500495
EST:     AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAAACAAACTG                         AAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
genomic: AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttt ... ttctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
EST: gi|116457908|gb|EG500500.1|EG500500
EST:     AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTG                         AAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
genomic: AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttt ... ttctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
EST: gi|116457916|gb|EG500508.1|EG500508
EST:     AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTG                         AAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
genomic: AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttt ... ttctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
EST: gi|116457919|gb|EG500511.1|EG500511
EST:     AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTG                         AAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
genomic: AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttt ... ttctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
EST: gi|116457901|gb|EG500493.1|EG500493
EST:     AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTG                         AAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA
genomic: AGGAGAGTGGAAAGATGCTGTAGACATGATTCTTGATCCAAGAGAAACTGatatcctttt ... ttctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaataaaggacgcagcattgcatagtttttcttgactttaagattctttttacAAAGGCATGTAGTAAATGATGCCCGGGAATATTACAAAGAAACTGGTGACATTGACGGGACTCTAAGGCAACTACCGCGATACCTCGTTGCTGAAAGAGC
 tttcttgac  putative branch site 
                                             ttctttttac  putative PPT
                                      tttaagattcttttta  TA-rich tract