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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttgtcctctgtttgaagaatactgataccgtagacaagattatcttgttgcatcatagtttatgttttaaagctcatttttctttcggtgtctttgtcttgtctaatgcagGTGAAGAAGCAACAGTCTCTGTCCCACAGTCCAAAGACAAAAACATCAGGCTTCACAGTCGCAACCGGGCAAGGATCTCCATCAGATTCGCCTGGAACTA

Basic information

species Arabidopsis thaliana
transcript AT3G03790.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125006348|gb|EL078617.1|EL078617
EST:     AGATATCCAGATGCAGGAG                         GTGAAGAAGCAACAGTCTCTGTCCCACAGTCCAAAGACAAAAACATCAGGC
genomic: AGATATCCAGATGCAGGAGgtacgttgtc ... tctaatgcagGTGAAGAAGCAACAGTCTCTGTCCCACAGTCCAAAGACAAAAACATCAGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttatgttttaaagctcatttttctttcggtgtctttgtcttgtctaatgcagGTGAAGAAGCAACAGTCTCTGTCCCACAGTCCAAAGACAAAAACATCAGGCTTCACAGTCGCAACCGGGCAAGGATCTCCATCAGATTCGCCTGGAACTA
                                            gtctaat  putative branch site (score: 3)
                                  tctttgtcttgtct  CT-rich tract
     atgttttaaa  TA-rich tract