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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataaatggtgtttcttttttcttttcttcttgctcaaaagttcaacttcctgttgaggtaatcttacaagccaacacctgtacagGTTTCAGAAGACTGTGAGGTTAGAGCTCACACGAGAACTGAGAGATAAACATGTCTCGAGCCCAACCAGTTTTATTCAAAGATTTGTGAATGTATAGAAG

Basic information

species Arabidopsis thaliana
transcript AT3G03630.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088056|gb|DR383815.1|DR383815
EST:     CCTTTTGGAGAGTGTAAACAACAAATCTCTTTGCAATACAGAAAAGAGAG                         GTTTCAGAAGACTGTGAGGTTAGAGCTCACACGAGAACTGAGAGATAAACA
genomic: CCTTTTGGAGAGTGTAAACAACAAATCTCTTTGCAATACAGAAAAGAGAGgtataaatgg ... acctgtacagGTTTCAGAAGACTGTGAGGTTAGAGCTCACACGAGAACTGAGAGATAAACA
EST: gi|86078792|gb|DR374549.1|DR374549
EST:     CCTTTTGGAGAGTGTAAACAACAAATCTCTTTGCAATACAGAAAAGAGAG                         GTTTCAGAAGACTGTGAGGTTAGAGCTCACACGAGAACTGAAAGATAAACA
genomic: CCTTTTGGAGAGTGTAAACAACAAATCTCTTTGCAATACAGAAAAGAGAGgtataaatgg ... acctgtacagGTTTCAGAAGACTGTGAGGTTAGAGCTCACACGAGAACTGAGAGATAAACA
EST: gi|164194030|gb|ES101168.1|ES101168
EST:     CTTTTGGAGAGTGTAAACAACAAAATCTCTTTGCAATACAGAAAAGAGAG                         GTTTCAGAAGACTGTGAGGTTAGAGCTCACACGAGAACTGAGAGATAAACA
genomic: CTTTTGGAGAGTGTAAACAAC-AAATCTCTTTGCAATACAGAAAAGAGAGgtataaatgg ... acctgtacagGTTTCAGAAGACTGTGAGGTTAGAGCTCACACGAGAACTGAGAGATAAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctcaaaagttcaacttcctgttgaggtaatcttacaagccaacacctgtacagGTTTCAGAAGACTGTGAGGTTAGAGCTCACACGAGAACTGAGAGATAAACATGTCTCGAGCCCAACCAGTTTTATTCAAAGATTTGTGAATGTATAGAAG
                              atcttac  putative branch site (score: 3)
                            taatctta  TA-rich tract