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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggatctatcttatatttttgctgttattttccgtctagatatttcctctgattatgcttttgggttgcagGTTTCTGTAGTCTTACGATGTAGAATGTCTGCTATTCAGAGTGCCGTTTATGATTGGATTAAAGCGACTGGAACTCTTAGAGTTGATCCAGACGATGAAA

Basic information

species Arabidopsis thaliana
transcript AT2G46020.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46020.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv15s0046g02290.t01 (Vitis vinifera), 3'ss of exon 10
gtaggatctatcttatatttttgctgttattttccgtctagatatttcctctgattatgcttttgggttgcagGTTTCTGTAGTCTTACGATGTAGAATGTCTGCTATTCAGAGTGCCGTTTATGATTGGATTAAAGCGACTGGAACTCTTAGAGTTGATCCAGACGATGAAA
||| |   | |      ||  || ||      |  |   ||     | |||| ||       |||  |||||||||||  | || ||| |||||| |||||| ||||||||| | ||  ||||||||||||| ||  |||||||||| |||||||||||||| || ||||| |
gtatgtgttgttagtctttggtggtgaagccctttgatgaggctgattctctaatacaaacattgaattgcagGTTTCGATTGTTTTAAGATGTAAAATGTCAGCTATTCAGGGGGCTATTTATGATTGGATAAAGTCGACTGGAACCCTTAGAGTTGATCCTGAAGATGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgctgttattttccgtctagatatttcctctgattatgcttttgggttgcagGTTTCTGTAGTCTTACGATGTAGAATGTCTGCTATTCAGAGTGCCGTTTATGATTGGATTAAAGCGACTGGAACTCTTAGAGTTGATCCAGACGATGAAA
                              ctctgat  putative branch site (score: 4)
                                       tgctttt  putative PPT
      tgttatttt  TA-rich tract