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...tttctgaataatttttgaatccttgattaatgctgatctgagaaaggtatcttatattctgtttgctctcttctttatcttttcttgtaccatgttttagGAAAGCTGGGGAACGTGAAAGTACAGTACAATTGAAACCCTGTGGAACACCTCTTCTCTCATCAGCTTCATGCGGAGATGCACTCACCAAAGGAAAAATC
species | Arabidopsis thaliana |
transcript | AT2G40930.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTTTCGGAGAATACGACTTTGCTTAGACTAGTACTCCGCCGCAGAGATCA GAAAGCTGGGGAACGTGAAAGTACAGTACAATTGAAACCCTGTGGAACACCEST: gi|116470354|gb|EG512946.1|EG512946
genomic: TCTTCGGAGAATACGACTTTGCTTAGACTAGTACTCCGCCGCAGAGATCAgtaagttaaa ... catgttttagGAAAGCTGGGGAACGTGAAAGTACAGTACAATTGAAACCCTGTGGAACACC
EST: TCTTCGGAGAATACGACTTTGCTTAGACTAGTACTCCGCCGCAGAGATCA GAAAGCTGGGGGAACGTGAAAGTACAGTACAATTGAAACCCTGTGGAACAC
genomic: TCTTCGGAGAATACGACTTTGCTTAGACTAGTACTCCGCCGCAGAGATCAgtaagttaaa ... catgttttagGAAAGCTGGGG-AACGTGAAAGTACAGTACAATTGAAACCCTGTGGAACAC
ggtatcttatattctgtttgctctcttctttatcttttcttgtaccatgttttagGAAAGCTGGGGAACGTGAAAGTACAGTACAATTGAAACCCTGTGGAACACCTCTTCTCTCATCAGCTTCATGCGGAGATGCACTCACCAAAGGAAAAATC
ttctgtttgctctctt CT-rich tract
tttatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctgaataatttttgaatccttgattaatgctgatctgagaaaggtatcttatattctgtttgctctcttctttatcttttcttgtaccatgttttagGAAAGCTGGGGAACGTGAAAGTACAGTACAATTGAAACCCTGTGGAACACCTCTTCTCTCATCAGCTTCATGCGGAGATGCACTCACCAAAGGAAAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - -tgaatcc
- - - - - - - - - - - - - - - - ctgatct
- - - - - - - - - - - - - - - - - - - -gagaaag