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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgctgatagaacttttgtatgtatcaagtgtgtgatgattgaattagctttgtggttcaaaggaaacaaaattttcagtcactctttgtatttccttagGTCCTGCAATTGTTGCAACAAAAGATGCAGGAGATGCTATTACTTCACTACAAAGTCTTGCTAGTTCAACATTTGATAGTAGTCAACTTGTTTTGACTGC

Basic information

species Arabidopsis thaliana
transcript AT2G37290.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G37290.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv08s0040g03050.t01 (Vitis vinifera), 3'ss of exon 10
--------------gtattttgctgatagaacttttgtatgtatcaagtgtgtgatgattgaattagctttgtggttcaaaggaaacaaaattttcagtcactctttgtatttccttagGTCCTGCAATTGTTGCAACAAAAGATGCAGGAGATGCTATTACTTCACTACAAAGTCTTGCTAGTTCAACATTTGATAGTAGTCAACTTGTTTTGACTGC
                | ||   ||   ||||| ||      |  || |     ||  || | |  | |||  || |     ||  ||  |  |||  ||||  |   | ||    |||||| |||| | ||| |||| || ||||| |||||||| || ||||   | |||  | ||||  | ||||| |||||||||||||| ||||||||||||||
gtacacagaaaaataaacttcagtgtctgaactctttggcacaataact-cacaat--ttaactctgtttttaggctgttcagagccatgaaattctatcacattcaat-ttcttgtagGTCATGCACTAGTTACAACGAAGGATGCTGGAGATGCAATCACTTTGTTGCAATCTTTTGCCGGCTCAACGTTTGATAGTAGTCAGCTTGTTTTGACTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctttgtggttcaaaggaaacaaaattttcagtcactctttgtatttccttagGTCCTGCAATTGTTGCAACAAAAGATGCAGGAGATGCTATTACTTCACTACAAAGTCTTGCTAGTTCAACATTTGATAGTAGTCAACTTGTTTTGACTGC
                                     ctctttgtatttcctt  CT-rich tract
                   aaacaaaattttca  TA-rich tract