Sequence
atgc intronic sequence ATGC exonic sequence...tgtggtcattgtttgataacttatactatgatcatctttggggttttgggccttttggcttgcattccatgtctttattcccttttcttgtgccgaacagGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTCCCCTACGGCGACCTCCAGGAGGATCACCCACTTACAGCACAGGGAGTCAGT
Basic information
species | Arabidopsis thaliana |
transcript | AT2G37160.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G37160.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA13G20240.1 (Glycine max), 3'ss of exon 11
tgtggtcattgtttgataacttatactatgatcatctttggggttttgggccttttggcttgcattccatgtctttattccctt---ttcttgtgccgaacagGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTCCCCTACGGCGACCTCCAGGAGGATCACCCACTTACAGCACAGGGAGTCAGT
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-atattcatt-cctgaaatttcccaacctt-ttgtttatgtgcattgcatttttcaaacttttatatataatacaaatgcactaaagatattttggtggttagGACACACAATTGCTTCTATGGGACCTGGAAATGGATGAGATTGTGGTACCCTTGCGACGTCCTTCTGGTGGATCCCCAACTTACAGTGCTGGAAGCCAGT
upper sequence: AT2G37160.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA10G05890.1 (Glycine max), 3'ss of exon 11
tgtggtcattgtttgataacttatactatgatcatctttggggttttgggccttttggcttg---cattccatgtctttattcccttttcttgtgccgaacagGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTCCCCTACGGCGACCTCCAGGAGGATCACCCACTTACAGCACAGGGAGTCAGT
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tatattcattcctg---aaatttcccaaccttttgtttatgtgcgttgcattttttaaattgttacatataatacaaatgcactaaagatatttggtggttagGACACACAATTGCTTCTATGGGACCTGGAAATGGATGAGATTGTGGTACCCTTGCGACGTCCTTCTGGTGGATCCCCAACTTACAGTGCTGGAAGCCAGT
upper sequence: AT2G37160.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 3'ss of exon 10
tgtggtcattgtttgataacttatactatgatcatctttggggttttgggccttttggcttgcattccatgt-----ctttattcc-cttttcttgtgccgaacagGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTCCCCTACGGCGACCTCCAGGAGGATCACCCACTTACAGCACAGGGAGTCAGT
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----atcaatttaaaaaaaatcgtatt-tatacat-tttgttgttctgctccacatgtcttcatgtccatgttgaaccattgtgcaacttgtctttctgtgagcagGACACACAGTTACTTCTATGGGACCTGGAAATGGATGAGATTGTAGTGCCACTTCGCAGATGTCCTGGTGGGTCCCCAACTTTCAGTACCGGAAGCCAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164029073|gb|ES149999.1|ES149999EST: AGAGGGGTTCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAG GACACACAGTTACTGCTATGGGACC
genomic: AGAGGGG-TCTGGCGAGAATGTCATGTATCGGTTTGGTTCTGTTGGTCAGgtattcagtt ... tgccgaacagGACACACAGTTACTGCTATGGGACC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgggccttttggcttgcattccatgtctttattcccttttcttgtgccgaacagGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTCCCCTACGGCGACCTCCAGGAGGATCACCCACTTACAGCACAGGGAGTCAGT
ttccatgtctttattc CT-rich tract
tctttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtggtcattgtttgataacttatactatgatcatctttggggttttgggccttttggcttgcattccatgtctttattcccttttcttgtgccgaacagGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTGTTCCCCTACGGCGACCTCCAGGAGGATCACCCACTTACAGCACAGGGAGTCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT