1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtatttatgcgttggcttcaaataatagaaacattgttattggcattttccgtgacttcatatactctactgatgatggtatacatataattgaacgtatcaaaacaaagatttctatgatttggaacattcattgtcccgtttacatgcttttactttgtcttcatgttcagCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACCAGCATGCTTGCCTATTGCTTCTAGCTCAGGATCTACAGGACACCATGAC
species | Arabidopsis thaliana |
transcript | AT2G36010.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGGATCATTCTTAGAAGTACAATGGGACCTATTGACGTATACCTCGTCAG CGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACCEST: gi|116396508|gb|EG439100.1|EG439100
genomic: AGGATCATTCTTAGAAGTACAATGGGACCTATTGACGTATACCTCGTCAGgtatttatgc ... tcatgttcagCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACC
EST: AGGATCATTCTTAGAAGTACAATGGGACCTATTGACGTATACCTCGTCAG CGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACCEST: gi|116396494|gb|EG439086.1|EG439086
genomic: AGGATCATTCTTAGAAGTACAATGGGACCTATTGACGTATACCTCGTCAGgtatttatgc ... tcatgttcagCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACC
EST: CAATGGGACCTATTGACGTATACCTCGTCAG CGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACCEST: gi|116396471|gb|EG439063.1|EG439063
genomic: CAATGGGACCTATTGACGTATACCTCGTCAGgtatttatgc ... tcatgttcagCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACC
EST: AGGATCATTCTTAGAAGTACAATGGGACCTATTGACGTATACCTCGTCAG CGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACC
genomic: AGGATCATTCTTAGAAGTACAATGGGACCTATTGACGTATACCTCGTCAGgtatttatgc ... tcatgttcagCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACC
gatttggaacattcattgtcccgtttacatgcttttactttgtcttcatgttcagCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACCAGCATGCTTGCCTATTGCTTCTAGCTCAGGATCTACAGGACACCATGAC
cttttactttgtcttc CT-rich tract
ttttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttatgcgttggcttcaaataatagaaacattgttattggcattttccgtgacttcatatactctactgatgatggtatacatataattgaacgtatcaaaacaaagatttctatgatttggaacattcattgtcccgtttacatgcttttactttgtcttcatgttcagCGAATTTGAAGGGAAATTCGAAGACACAAATGGGAGTGGTGCAGCACCACCAGCATGCTTGCCTATTGCTTCTAGCTCAGGATCTACAGGACACCATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA