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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatagccgcccagatatatttttctaattaatcatttcatagaaaaaatgtcaggagtgaaaatatttttcagGTGAAAGAGTCATGGCTTGATGTTCAGCTTTGTCAAGAAGGAAAAGAAGGATGCGAGGCATCAAATAACACTAGCCCCTCTCGGGTTCTTAAGTTCCCAA

Basic information

species Arabidopsis thaliana
transcript AT2G35610.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35610.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA16G20730.1 (Glycine max), 3'ss of exon 11
-----------gtaatatagccgcccagatatatttttctaattaatcatttcatagaaaa--aatgtcaggagtgaaaatattt---ttcagGTGAAAGAGTCATGGCTTGATGTTCAGCTTTGTCAAGAAGGAAAAGAAGGATGCGAGGCATCAA-ATAACACTAGCCCCTCTCGGGTTCTTAAGTTCCCAA
            || || | |       |   ||  ||||  ||  |   || ||   ||   ||  | |   |      |  ||   | ||||| ||| |||||||||||||||||||||| ||| |||||||||   |||  || || ||||||  || | |  |  ||      ||      ||| |  | 
gtactaaatgtctattacatcaaatttaaatcatgattcttgtttcttgatttatgtgaatttaaacttatatgccttggttcttgagtgcagGTAAAAAAGTCATGGCTTGATGTTCAGCTCTGTAAAGAAGGAACCCAAGATTGTGATGCATCAGCATCAAATGATACCAATGTTGGAGGAGGAGTACTTA-

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA01G35690.1 (Glycine max), 3'ss of exon 11
---------------------gta-atatagccgcccagatatatttttctaattaatcatttcatagaaaaaatgtcaggagtgaaaatatttttcagGTGAAAGAGTCATGGCTTGATGTTCAGCTTTGTCAAGAAGGAAAAGAAGGATGCGAGGCATCAAATAACACTAGCCCCTCTCGGGTTCTTAAGTTCCCAA
                      || || |          ||     |||||  ||     |  |  | ||||  | ||  |  ||    |    ||||||||||  |||||||||||||||||||||| ||| | || ||||   |||  ||    |||||||||||||| |         | || || || || ||||
gtgaataaatttcatttccatctacatttgaaactgtgaattctcctttcttgttgtatctccctcacaaaacttatc--gcctgggtctcgagttcagGTGAAGAAGTCATGGCTTGATGTTCAGCTCTGTAAGGATGGAACCCAAGATTGTTTTGCATCAAATAACACCACTGTTGGGGGAGTACTCAAATTTCCAA

upper sequence: AT2G35610.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv02s0087g00740.t01 (Vitis vinifera), 3'ss of exon 11
-------------------------gtaatatagccgcccagatatatttttctaattaatcatttcatagaaaaaatgtcaggagtgaaa-atatttttcagGTGAAAGAGTCATGGCTTGATGTTCAGCTTTGTCAAGAAGGAAAAGAAGGATGCGAGGCATCAAATAACACTAGCCCCTCTCGGGTTCTTAAGTTCCCAA---
                                |  | ||  | | |   | | |   |   | | || |||   || |    | | |   |  | | |||||||||||||| ||||||||||||||||| ||||||| |||||||     ||| ||  | | | |||| || || ||    || |  |   | |   | ||||   
gtatatcattagctgccacatttagagctcggattcaccatgttgttcctctttttatctccttatcttagtggaacttctcgtattttgatgtctgtttcagGTGAAAGATTCATGGCTTGATGTTCAACTTTGTCGAGAAGGATCCCCAGGTTGTAATGTAACAAACAATACAAG---TTCACTAGGAATAAGACTTCCAAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttctaattaatcatttcatagaaaaaatgtcaggagtgaaaatatttttcagGTGAAAGAGTCATGGCTTGATGTTCAGCTTTGTCAAGAAGGAAAAGAAGGATGCGAGGCATCAAATAACACTAGCCCCTCTCGGGTTCTTAAGTTCCCAA
                                             tatttttc  CT-rich tract
      taattaatcatttcat  TA-rich tract