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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgtagtggagtgaaattagcaagtacgaaatggaagatattttgaacacagatgatttttaaaattggtcttcctgttgatgacttgttttttttttagATTGCTGCTGTGTTCCGCAAATCGTTGAGGTTAACTAATGAAGGTCGTAGAAAGTTTCAAACAGGAAAGATAACCAACTTAATGACGACTGATGCCGAAT

Basic information

species Arabidopsis thaliana
transcript AT2G34660.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G34660.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G084181_T01 (Zea mays), 3'ss of exon 10
ttgtagtggagtgaaattagcaagtacgaaatggaagatattttgaacacagatgatttttaaaattggtcttcctgttgatgacttgttttttttttagATTGCTGCTGTGTTCCGCAAATCGTTGAGGTTAACTAATGAAGGTCGTAGAAAGTTTCAAACAGGAAAGATAACCAACTTAATGACGACTGATGCCGAAT
  |    |   |   |||   | ||   |  |     || |||     |   ||| |  | ||| ||    ||    ||      ||  || || |  ||||||| ||||| ||||||||||| ||| |  ||||||||||  ||||||||||||||    | || | ||| ||||| || ||  | |||||||| || |
cagacccgctatatgatttctatgttaaatgttttgaatttttcttttaggtatggtcatcaaagtttacattgaaatttgaccttttgttcttgtgcagATTGCAGCTGTTTTCCGCAAATCTTTGCGACTAACTAATGATAGTCGTAGAAAGTTTGCTTCTGGGAGGATTACCAATTTGATTTCAACTGATGCGGAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacacagatgatttttaaaattggtcttcctgttgatgacttgttttttttttagATTGCTGCTGTGTTCCGCAAATCGTTGAGGTTAACTAATGAAGGTCGTAGAAAGTTTCAAACAGGAAAGATAACCAACTTAATGACGACTGATGCCGAAT
                              tgttgat  putative branch site (score: 4)
                                       cttgtttttttttt  putative PPT
     agatgatttttaaaat  TA-rich tract