1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatatctcttttaaaaagaatccgtcattggcatagtttaccttttaaaactgcagaatctttgacattattagttttgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGAGCAACACTCGACCATCGGCTCATCTGCACGCCCATCTTTACGACAAGTT
species | Arabidopsis thaliana |
transcript | AT2G34560.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACGCACATTGGC-ATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGEST: gi|164086731|gb|ES163954.1|ES163954
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCG
EST: TTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTEST: gi|125196416|gb|EL211370.1|EL211370
genomic: TTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCT
EST: TTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTEST: gi|164074298|gb|ES153208.1|ES153208
genomic: TTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCT
EST: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG AGCTGCCAAAAATTGGTCCCATCCTGCCEST: gi|47831791|gb|CK121475.1|CK121475
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCC
EST: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGAEST: gi|164188794|gb|ES028361.1|ES028361
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGA
EST: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTEST: gi|125061131|gb|EL129770.1|EL129770
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATT
EST: ATGTTGTGCCTGAAGACG AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGAEST: gi|125149159|gb|EL182463.1|EL182463
genomic: ATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGA
EST: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG AGCTGCCAAAAATTGGTCCCATCCTGCCAGEST: gi|86084400|gb|DR380159.1|DR380159
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAG
EST: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACG AGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGA
genomic: ACGCACATTGGCTATTTTGGAAGACAGAGAAGATGTTGTGCCTGAAGACGgtaatatctc ... tgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGA
atagtttaccttttaaaactgcagaatctttgacattattagttttgtcttgcagAGCTGCCAAAAATTGGTCCCATCCTGCCAGAAGACATTGATCGAGCTCTGAGCAACACTCGACCATCGGCTCATCTGCACGCCCATCTTTACGACAAGTT
ctttgac putative branch site (score: 4)
ttttgtctt putative PPT
acattattagtttt TA-rich tract