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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattagttggaataaactataaaacatatatatggagcttcaaaatcaaatttttttgatgtacataaatgcagATGTGAATGAGTGTGAGGAGAAAACAGCGTGCCAATGTCGCGATTGCAAATGCAAAAACACATGGGGAAGCTATGAATGTAGTTGCAGCGGAAGCTTGCT

Basic information

species Arabidopsis thaliana
transcript AT2G30290.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30290.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os11g02464.1 (Oryza sativa), 3'ss of exon 9
----------------------------------------------------------------gtattagttgga-ataaactataaaacatatatatggagcttcaaaatc---aaatttttttgatgtacataaatgcagATGTGAATGAGTGTGAGGAGAAAACAGCGTGCCAATGTCGCGATTGCAAATGCAAAAACACATGGGGAAGCTATGAATGTAGTTGCAGCGGAAGCTTGCT
                                                                || |||||   | || |  |  || |||    | | | ||     |  |     | |  | |||  ||  |      |||| |  |||| ||  |||| |  || || ||||| ||    || ||||||||||| |||||||||||||||||||||||  ||||||| ||  |||||||
gtaagaatcgatttgtgaaccctgttcagctgttggatgtgcttgccatcctgcaaagcttgtagttttagtgaaatatcacttgcaatacacccttgttgtgcacttgaccccttgtactgatgtgaaatattttgtgaaagATATTGATGAATGCAAGGAAAGGACTGCATGCCAGTGCAAGGAATGCAAATGCAAGAACACATGGGGAAGCTATGAATGCGGTTGCAGTGGCGGCTTGCT

upper sequence: AT2G30290.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os12g02390.1 (Oryza sativa), 3'ss of exon 9
----------------------------------------------------------------gtattagttgga-ataaactataaaacatatatatggagcttcaaaatc---aaatttttttgatgtacataaatgcagATGTGAATGAGTGTGAGGAGAAAACAGCGTGCCAATGTCGCGATTGCAAATGCAAAAACACATGGGGAAGCTATGAATGTAGTTGCAGCGGAAGCTTGCT
                                                                || |||||   | || |  |  || |||    | | | ||     |  |     | |  | |||  ||  | |    |||| |  |||| ||  |||| |  || || ||||| ||    || || |||||||| |||||||||||||||||||| ||  ||||||| ||  |||||||
gtaagaatcgatttgtgaaccctgttcagctgttggatgtacttgccatcctgcaaagcttgtagttttagtgaaatatcacttgcaatacacccttgttgtgcacttgaccccttgtactgatgtgaaatattttatgaaagATATTGATGAATGCAAGGAAAGGACTGCATGCCAGTGCAAGGAATGTAAATGCAAGAACACATGGGGAAGCTATGAGTGCGGTTGCAGTGGCGGCTTGCT

upper sequence: AT2G30290.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G389362_T01 (Zea mays), 3'ss of exon 10
-------------------------------------------------------------------------------------gtattagttggaataaactataaaacat---atatatggagcttcaaaatcaaatttt--tttgatgtacataaatgcagATGTGAATGAGTGTGAGGAGAAAACAGCGTGCCAATGTCGCGATTGCAAATGCAAAAACACATGGGGAAGCTATGAATGTAGTTGCAGCGGAAGCTTGCT
                                                                                      | |  | ||    | |  ||| | |||   |  | | |  ||||     | |||  |  | |||   |        ||||| |  |||||||| |||| |  || | ||| |||||    || |||||||||||||||||||||||||||||||| ||| | ||||| ||| |||||||
gtaaggcacatttctaaggctcgtctttctagaagtgcttgcctgtcctccacagcttctgctctaatgttcttcagaattgtctttctctgctgagccatatcatataccattggacttgtcgcacttcccttgcgaatgctgatgtgaaacatgctgtgacagATATTGATGAGTGTAAGGAAAGGACTGTGTGTCAATGCAAAGAATGCAAATGCAAAAACACATGGGGAAGCTATGAGTGTGGCTGCAGTGGAGGCTTGCT

upper sequence: AT2G30290.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA18G44580.1 (Glycine max), 3'ss of exon 9
--------------------------------------------------------------------------------------------------------------------------------gtattagt--tggaataaactataaaacatatatatggagcttcaaaatcaaatttttttgatgtacataaatgcagATGTGAATGAGTGTGAGGAGAAAACAGCGTGCCAATGTCGCGATTGCAAATGCAAAAACACATGGGGAAGCTATGAATGTAGTTGCAGCGGAAGCTTGCT
                                                                                                                                 |||||||  ||  || | | ||   | | |||| | |   ||   |      || || |||| ||  |   ||||||| |  |||||||  | ||||||||||| || ||||| |  | |||||||||||||||||| |||||||| || || || |  ||||   |  | |||  
ggtacttgctgccctaaatttagtgattgttgtagtattcggtgaatggcaaacacaaatcagatagagctacttctgttagtggattaatgctgaggaattgaatttgattcacattcctgcagttgttattagtcatgctattagccattctagaaatatgttggcttttctacatttcttcttctgat-tatgt---tgcaGATATTGATGAGTGCAAAGAGAAAACAGCCTGTCAATGCCCAGGTTGCAAATGCAAAAACACCTGGGGAAGTTACGAGTGCAAATGCAAAAGTGGTTTGT-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaacatatatatggagcttcaaaatcaaatttttttgatgtacataaatgcagATGTGAATGAGTGTGAGGAGAAAACAGCGTGCCAATGTCGCGATTGCAAATGCAAAAACACATGGGGAAGCTATGAATGTAGTTGCAGCGGAAGCTTGCT
                                  ttttgat  putative branch site (score: 4)
                      aaaatcaaattttttt  TA-rich tract