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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctaaatatctcttgctatatgtgctactatcctttcagaatttatacaaagaaactaggtatataattcatcttgatgatatatacagGGAAAATGTCGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGTGCAGGTTTCAACGTTTTTCATGATATTTTTCTCCATATTTG

Basic information

species Arabidopsis thaliana
transcript AT2G26510.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G26510.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv18s0001g11260.t01 (Vitis vinifera), 3'ss of exon 10
---gtaagttctaaatatctct-tgctatatgtgctactatcctttcagaatttatacaaagaaactagg---tatataattcatcttgatgatatatacagGGAAAATGTCGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGTGCAGGTTTCAACGTTTTTCATGATATTTTTCTCCATATTTG
    ||   |  || ||| ||| | | ||     ||| |  || || |    |  ||  |    | |||    | | | |    |||  |  || | | ||| |||||||| || |||||||| |||||||  |||||||| ||| | ||||||||| | |||||   ||||||| | || |||||||||||||
ttcatagaata-aattatttctatacaatgcagactattgaccattgattgatggtatcagagtaatagagcttcttttaacagtctcaaatatgt-tgcagTGAAAATGTGGGCCTCCTTGGACTCACACACATAGGGAGCAGAAGGGTGGTGCAGATATCAACTGCTTTCATGTTCTTCTTCTCCATATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86085651|gb|DR381410.1|DR381410
EST:     GTGCTCCTTGAAGGAATATTTGGTCCCATTACTGGCAATACCGCGTCCGT                         GGAAAATGTCGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGT
genomic: GTGCTCCTTGAAGGAATATTTGGTTCCATTACTGGCAATACCGCGTCCGTgtaagttcta ... atatatacagGGAAAATGTCGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGT
EST: gi|164082177|gb|ES064000.1|ES064000
EST:     GTGCTCCTTGAAGGAATATTTGGTTCCATTACTGGCAATACCGCGTCCGT                         GGAAAATGTCGGTCTCCTTGGCC
genomic: GTGCTCCTTGAAGGAATATTTGGTTCCATTACTGGCAATACCGCGTCCGTgtaagttcta ... atatatacagGGAAAATGTCGGTCTCCTTGGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagaatttatacaaagaaactaggtatataattcatcttgatgatatatacagGGAAAATGTCGGTCTCCTTGGCCTCACACGAATAGGGAGTAGACGAGTGGTGCAGGTTTCAACGTTTTTCATGATATTTTTCTCCATATTTG
                                     tcttgat  putative branch site (score: 4)
     aatttatacaaagaaa  TA-rich tract