Sequence
atgc intronic sequence ATGC exonic sequencegtgagtttataatacaaatgtaccaaaacctttacaattactacaatactgatgatttcaatcttttttaatctctagCTGCTCACCAAATCTCGTTAATCACCAAGTTATTGTGGAAAGCATGGAGTCCCCGCTCGCTCATATCGGTCTATACGCCAGTATGGAT
Basic information
species | Arabidopsis thaliana |
transcript | AT2G23740.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G23740.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA11G06620.1 (Glycine max), 3'ss of exon 10
----gtgag--tttataat--acaaatgtaccaaa-----acctttacaatt--actaca-atactgatgatttc----aatcttttttaat--ctctagCTGCTCACCAAATCTCGTTAATCACCAAGTTATTGTGGAAAGCATGGAGTCCCCGCTCGCTCATATCGGTCTATACGCCAGTATGGAT
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atgcataaacttttgtgactagcaactattctacattctgatttttacatcctaaatgtatgttatgatggtttcctctaacaatttattgttgttgtagCTGCTCACCAAATCTTGTCAATCACCAAGTTATTGTAGAGAGCATGGATTGTGAACGTGCACATATTGGTTTTTATGCAAGTCGAGAT
upper sequence: AT2G23740.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA01G38670.1 (Glycine max), 3'ss of exon 12
------------------gtgagtttataatacaaatgtaccaaaacctttacaat-tactacaata-ctgatgatttcaatcttttttaat--ctctagCTGCTCACCAAATCTCGTTAATCACCAAGTTATTGTGGAAAGCATGGAGTCCCCGCTCGCTCATATCGGTCTATACGCCAGTATGGAT
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cataaacttttgtgactagcaactatactacattctgatttttacatcctaagtgtatgttatgttggcttcctcttacaatttgttgttgttgttgtagCTGCTCACCAAATCTTGTCAATCACCAAGTTCTTGTAGAGAGCATGGATTGTGAACGTGCACATATTGGTTTTTATGCAAGTCGAGAT
upper sequence: AT2G23740.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv04s0023g00980.t01 (Vitis vinifera), 3'ss of exon 9
-------------gtgagtttat-aatacaaatgtaccaaaacctttacaa---ttactacaata-ctgatgattt----caatcttttttaatctctagCTGCTCACCAAATCTCGTTAATCACCAAGTTATTGTGGAAAGCATGGAGTCCCCGCTCGCTCATATCGGTCTATACGCCAGTATGGAT
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actttagaatttactgcttttcccaatatttgtttgagaggatattggaaggctttgtttaaatgtctattgacttgttctgacatattgttgttggtagCTGCTCACCAAACCTCATTAATCACCAAGTTCTTGTGGAAAGCATGGATTGTCAGCTTGCACATATTGGTCTCTTTGCAAATCGAGATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|163981857|gb|ES053347.1|ES053347EST: AACATCTCTCGATTCATCAATCACAG CTGCTCACCAAATCTCGTTAATCACCAAGTTATTGTGGAAAGCATGGAGTC
genomic: AACATCTCTCGATTCATCAATCACAGgtgagtttat ... taatctctagCTGCTCACCAAATCTCGTTAATCACCAAGTTATTGTGGAAAGCATGGAGTC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.caaaacctttacaattactacaatactgatgatttcaatcttttttaatctctagCTGCTCACCAAATCTCGTTAATCACCAAGTTATTGTGGAAAGCATGGAGTCCCCGCTCGCTCATATCGGTCTATACGCCAGTATGGAT
tcttttttaatctct CT-rich tract
atgatttcaatctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagtttataatacaaatgtaccaaaacctttacaattactacaatactgatgatttcaatcttttttaatctctagCTGCTCACCAAATCTCGTTAATCACCAAGTTATTGTGGAAAGCATGGAGTCCCCGCTCGCTCATATCGGTCTATACGCCAGTATGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA