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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccaggtcctttctcagttacttcatcattaatcatttcaaatcaaactcaacaaagcaaatcactcatcaccagGCCTTCGAGCAAGTTCTGAGCTTTCTAGAGAAAGAAGAAACTATGGAGATCCCAGACGGCGACCTCTAATTTCCCAGCCTTCTTTTCTCCGTCTCTTCAT

Basic information

species Arabidopsis thaliana
transcript AT2G21940.4
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125212849|gb|EL227803.1|EL227803
EST:     AGATCTCACACCAACTGAAATTGCTATCGAG                         GCCTTCGAGCAAGTTCTGAGCTTTCTAGAGAAAGAAGAAACTGTGGAGATC
genomic: AGATCTCACACCAACTGAAATTGCTATCGAGgtaagccagg ... tcatcaccagGCCTTCGAGCAAGTTCTGAGCTTTCTAGAGAAAGAAGAAACTATGGAGATC
EST: gi|86033529|gb|DR329282.1|DR329282
EST:     TGGCTATAAAAATGTCTCAGATCTCACACCAACTGAAATTTG-TATCGAG                         GCCTTCGAGCAAGTTCTGAGCTTTCTAGAGAAAGAAGAAACTATGGAGATC
genomic: TGGCTATAAAAATGTCTCAGATCTCACACCAACTGAAA-TTGCTATCGAGgtaagccagg ... tcatcaccagGCCTTCGAGCAAGTTCTGAGCTTTCTAGAGAAAGAAGAAACTATGGAGATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatcattaatcatttcaaatcaaactcaacaaagcaaatcactcatcaccagGCCTTCGAGCAAGTTCTGAGCTTTCTAGAGAAAGAAGAAACTATGGAGATCCCAGACGGCGACCTCTAATTTCCCAGCCTTCTTTTCTCCGTCTCTTCAT
      cattaat  putative branch site (score: 3)
       attaatcatttcaaat  TA-rich tract