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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtttcatgtctttgaaaagagattctgctattatactataccgctacactcttcaacaagaataccacttattacctaaatgtgttcttgccgtcgcagATTTATACTCTGCCGTGAAGCCATCGCAGAGGAGAGGAGGAGAAGGTTATTTATTCGGGGGAGTGATGTCTTTGGTGATGGGGTTAATGACTGTGGTGAG

Basic information

species Arabidopsis thaliana
transcript AT2G21540.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124997786|gb|EL070055.1|EL070055
EST:     TTCTACATGGCCTACAAATCTCCACAAGTCAAACTATCCTGAACCTGAAG                         ATTTATACTCTGCCGTGAAGCCATCGCAGAGGAG
genomic: TTCTACATGGCCTACAAATCTCCACAAGTCAAACTATCCTGAACCTGAAGgtacactaca ... gccgtcgcagATTTATACTCTGCCGTGAAGCCATCGCAGAGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacactcttcaacaagaataccacttattacctaaatgtgttcttgccgtcgcagATTTATACTCTGCCGTGAAGCCATCGCAGAGGAGAGGAGGAGAAGGTTATTTATTCGGGGGAGTGATGTCTTTGGTGATGGGGTTAATGACTGTGGTGAG
                             acctaaa  putative branch site (score: 3)
                                        ttcttgcc  putative PPT
                      acttatta  TA-rich tract