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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttattttcttattaggattgttttggagttggttataaaaacagagtttttttggtctttctttgtttggtgatcttaactcttatctgtttccttcagGAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTCGAGTCCTAGTAATGTTCATGGCATTCTTGATGGCGGTTTTCACATTCTT

Basic information

species Arabidopsis thaliana
transcript AT2G21520.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164227545|gb|EL986292.1|EL986292
EST:     TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAG                         GAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGC
genomic: TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGC
EST: gi|125050938|gb|EL123207.1|EL123207
EST:     ACCCGCCATCCAGAGAGTTGCCTCAAGAG                         GAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTC
genomic: ACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTC
EST: gi|124988838|gb|EL061196.1|EL061196
EST:     GACGCCACCTGGAAGGTGTAAACCCGCCATCCAGAGAGTTGCCTCAAGAG                         GAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCAT
genomic: GACGCCACCTGGAAGGTG-AAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCAT
EST: gi|125323399|gb|EL337481.1|EL337481
EST:     TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAG                         GAGCTTTTAATGTCTCCCACCG
genomic: TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGAGCTTT-AATGTCTCCCACCG
EST: gi|164039146|gb|ES150325.1|ES150325
EST:     GACGCCACCTGGAAGGTGAAACCCGCCACCCAGAGAGTTGCCTCAAGAG                         GAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTC
genomic: GACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTC
EST: gi|124777233|gb|EH867176.1|EH867176
EST:     TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAG                         GAAGCTTTAATGTCTCCCACCGTTCCAAAAGATCA
genomic: TGACGCCACCTGGAAGGTGAAACCCGCCATCCAGAGAGTTGCCTCAAGAGgttagttagt ... tttccttcagGA-GCTTTAATGTCTCCCACCGTTCCAAAAGATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtttttttggtctttctttgtttggtgatcttaactcttatctgtttccttcagGAGCTTTAATGTCTCCCACCGTTCCAAAAGATCATGAAGGCATCAAGGCTCGAGTCCTAGTAATGTTCATGGCATTCTTGATGGCGGTTTTCACATTCTT
                             tcttaac  putative branch site (score: 2)
                                   ctcttatctgtttcct  CT-rich tract
             tttcttt  TA-rich tract