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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtcacaaactaattatcacaatgagttaaaattttgccatgatttgaattcaatatctcttttgttttgcagTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATG

Basic information

species Arabidopsis thaliana
transcript AT2G19940.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19940.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA20G01220.1 (Glycine max), 3'ss of exon 9
-----------------------gtatgtcacaaactaattat--cacaatgagttaaaattttgccatgatttgaattcaatatctcttttgttttgcagTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATG
                        | ||     | ||| |     || | ||   |   | ||||    ||| | | | |  ||| | | |||| | |||||||||||||||||||||||| |  |||||| | ||   ||||||||||| || |||||||| ||||| || || ||||||
ctatttgttatatattgccaatgatttgattttagctattggggacatattggcatctgaatttgaatagatctaattaccttatttttgttgtat-gcagTTCCTGAAATTGAACAGGGACTTGCTGATGCTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACACCTAATTCCAATG

upper sequence: AT2G19940.2 (Arabidopsis thaliana), 3'ss of exon 9
lower sequence: GLYMA07G29630.1 (Glycine max), 3'ss of exon 10
---------gtatgtcacaaac----taattatcacaatgag-------ttaaaattttgccatgatttgaattcaatatct--cttttgttt--tgcagTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATG
          ||| |  | |      | ||| |  | ||  |       ||   || ||    ||| | ||  | | |||||   |||||||   |||||||||||||||||| |||||| |  |||||| | ||   ||||||||||| || |||||||| |||||||| || ||||||
ctatttgttatatattgctagtgatttgattttagctattggggacatattggcatcttaatttgaatagatctaattatcttatttttgttgtatgcagTTCCTGAAATTGAGCAGGGACTTGCTGATGCTTCAGGTTCAAAAGTAACTGTTAGTTTTACACCACATCTAATTCCAATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125102564|gb|EL157278.1|EL157278
EST:     CTTATGGTGTCACCCGTCATCGCCAT
genomic: CTTATGGTGTCACCCGTCATCGCCAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaatgagttaaaattttgccatgatttgaattcaatatctcttttgttttgcagTTCCTGAAATTGAACAGGGATTATCTGATGTTGCACAGTCAAAAGTAACAGTCAGTTTTACGCCACATCTCATGCCAATG
                                    tatctcttttgtttt  CT-rich tract
                        atttgaattcaatat  TA-rich tract