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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattctcatatctacttgtttgaaacataagatactgaatatttcagatgcttaacaatttctattcttttttgttttatagATACTGGAACTACTTGAGAAAACAAACCTTTGTGCTAGAATCATACATATCGAAAGTTAACTGGATAATGAACAAGGCTTTGTTTGCTGTCCATTGTTAT

Basic information

species Arabidopsis thaliana
transcript AT2G19880.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G19880.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os01g67870.1 (Oryza sativa), 3'ss of exon 10
gtacattctcatatctacttgtttgaaacataag-atactgaatatttcagatgcttaacaatttctattcttttttgttttatagATACTGGAACTACTTGAGAAAACAAACCTTTGTGCTAGAATCATACATATCGAAAGTTAACTGGATAATGAACAAGGCTTTGTTTGCTGTCCATTGTTAT
     | ||   |  | | | ||  || | || | |||   || |  | |     || ||| |   ||| || | |  || |  ||||||||||| ||| | || |||||||| ||||| || ||||||||  |||| || ||||||||||| ||||||   ||  | |||||    || || |||
----gtactacaaatttcatattgtaaccttatgtataggcaacaaattatcccttttaca-tacatatgctctatctttatgcagATACTGGAATTACCTAAGGAAACAAACTTTTGTTCTTGAATCATATGTATCAAAGGTTAACTGGATGATGAACCGTGCACTATTTGCATCGCACTGCTAT

upper sequence: AT2G19880.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv11s0016g03130.t01 (Vitis vinifera), 3'ss of exon 10
gtacattctcatatctacttgtttgaaacataagatactgaatatttcagatgcttaacaatttctattcttttttgttt-tatagATACTGGAACTACTTGAGAAAACAAACCTTTGTGCTAGAATCATACATATCGAAAGTTAACTGGATAATGAACAAGGCTTTGTTTGCTGTCCATTGTTAT
     || | ||||   ||| ||  |||  |    |     ||  |     | |||    || | |   ||||||   || | |||||||||||| |||||||| || ||||| ||||| || ||||||||||| ||||| ||||||||| | |||||    || || ||| ||  ||| || |||
---gtttttgatattccctt-ttcaaaatttgttttttcacatggtat---tccttgttgatcttttccctttttgacttgtgtagATACTGGAATTACTTGAGGAAGCAAACATTTGTTCTTGAATCATACATTTCGAAGGTTAACTGGGTTATGAATCGTGCATTATTTTCTTCCCACTGCTAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagatactgaatatttcagatgcttaacaatttctattcttttttgttttatagATACTGGAACTACTTGAGAAAACAAACCTTTGTGCTAGAATCATACATATCGAAAGTTAACTGGATAATGAACAAGGCTTTGTTTGCTGTCCATTGTTAT
                      gcttaac  putative branch site (score: 3)
                               tttctattcttttttg  putative PPT
                        ttaacaatttctattc  TA-rich tract