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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttcatcatcttaagatttctagatttctataaatatgcatgtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcctctgaatttagaaaagttctctctctctttatcaactgaaattggttcttttgtctggaatttagGCAAGACGGGTTCACAAGTGAAATCAGCGTGGGCGGCCGTTTGGCTTATAATGTTATCATTGGGACTTGCAGCTGCTGGTGCATACCTCGTTTACAAATA

Basic information

species Arabidopsis thaliana
transcript AT2G14720.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164001018|gb|ES170905.1|ES170905
EST:     CTCTTGTAGC-GGGACCTTCTCTACATGAGAGACCATGACACTTGCATCA                         GCAAGACGGGTTCACAAGTGAAA
genomic: CTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttc ... tggaatttagGCAAGACGGGTTCACAAGTGAAA
EST: gi|125138195|gb|EL177700.1|EL177700
EST:     CTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCA                         GCAAGACGGGTTCACAAGTGAAAT
genomic: CTCTTGTAGCGGGGACCTTCTCTACATGAGAGACCATGACACTTGCATCAgtgagttttc ... tggaatttagGCAAGACGGGTTCACAAGTGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaagttctctctctctttatcaactgaaattggttcttttgtctggaatttagGCAAGACGGGTTCACAAGTGAAATCAGCGTGGGCGGCCGTTTGGCTTATAATGTTATCATTGGGACTTGCAGCTGCTGGTGCATACCTCGTTTACAAATA
                                   ttcttttgtct  CT-rich tract
                 tttatcaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagttttcatcatcttaagatttctagatttctataaatatgcatgtacgagtatgtcacacacgaaaagagtactcgcgcatacaaatagcctctgaatttagaaaagttctctctctctttatcaactgaaattggttcttttgtctggaatttagGCAAGACGGGTTCACAAGTGAAATCAGCGTGGGCGGCCGTTTGGCTTATAATGTTATCATTGGGACTTGCAGCTGCTGGTGCATACCTCGTTTACAAATA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT