1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatccatctttccctcttacacgcctcgtggtacaaataacacgcctcgtcttttgaaattataaaagagtactactgtttgggtttcagGTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGATTGAGTATTCCTACAATAATGGGCCTATTCAGAAAACACTGACCGCAG
species | Arabidopsis thaliana |
transcript | AT2G05990.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGG GTCCTTTGGGAAGCCGAGCAGCAAAAGEST: gi|125103472|gb|EL157868.1|EL157868
genomic: -TATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGGgtaatccatc ... tgggtttcagGTCCTTTGGGAAGCCGAGCAGCAAAAG
EST: ATATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGG GTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACAEST: gi|47829300|gb|CK118984.1|CK118984
genomic: ATATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGGgtaatccatc ... tgggtttcagGTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACA
EST: ATATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGG GTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGA
genomic: ATATGAAGCTGGAAGGAAATCAAACATTAGGGTCAACACCATCTCTGCGGgtaatccatc ... tgggtttcagGTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGA
aataacacgcctcgtcttttgaaattataaaagagtactactgtttgggtttcagGTCCTTTGGGAAGCCGAGCAGCAAAAGCCATTGGGTTCATAGACACCATGATTGAGTATTCCTACAATAATGGGCCTATTCAGAAAACACTGACCGCAG
aaataac putative branch site (score: 2)
ttttgaaattataaaa TA-rich tract