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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaatcgttataataacctgttttttaactgcactgctcttcaaaattcaattactcgcccgttattgaatattcttcttccctgtttccgtagGTTGTTCTTGGGATCAGCTCATTTCTCATTGAACCAATGTGTCAGCGGATGGGTGCTCGGGTTGTATGGGCTTTGAGCAATTTTACTGTATTTGCCTGCA

Basic information

species Arabidopsis thaliana
transcript AT2G02860.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02860.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA08G40980.1 (Glycine max), 3'ss of exon 10
-----------------------------------------------------------------gtaagaatcgttataataacctgttttttaactgcact----gctcttcaaaat--tcaattactcgcccg--ttattgaatattcttcttccctgtttccgtagGTTGTTCTTGGGATCAGCTCATTTCTCATTGAACCAATGTGTCAGCGGATGGGTGCTCGGGTTGTATGGGCTTTGAGCAATTTTACTGTATTTGCCTGCA
                                                                     |||   || || |   || || || |||||   |    | | || |   |   |||||| |   | |  | ||   | |||  | ||   ||  |   |||||||| ||||| || ||||| ||  ||||||||||||||||| || ||||||||||     | ||||||||  ||||||||||||  || ||||  ||||
gtaagaactcaagattgagcatatttatttttaaagaaacttgtcacaagctttactgatgatgatctggaacttttttatttttcttttattaaactgactttctggatttttatcctgcccaattattgatctgagtcatctgacattgctttta--tggcttgttagGTTGTCCTTGGAATTAGCTCTTTCTTCATTGAACCAATGTGTAAGTGGATGGGTGCAAAATTAGTATGGGCACTGAGCAATTTTATCGTCTTTGTTTGCA

upper sequence: AT2G02860.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv01s0026g01960.t01 (Vitis vinifera), 3'ss of exon 10
--------------------------------------------------------------------------------gtaagaatcgtta-taataacctgttttttaactgcactgctcttcaaaattcaattactcgcccgttattgaatattcttcttccctgtttccgtagGTTGTTCTTGGGATCAGCTCATTTCTCATTGAACCAATGTGTCAGCGGATGGGTGCTCGGGTTGTATGGGCTTTGAGCAATTTTACTGTATTTGCCTGCA
                                                                                |||| |    ||| |   ||    ||  | || | |  | |  || | | | | | || | |    ||    | |||  || |       || | |||||||||||||| || ||||| || || |||||||| ||||||||||||||||| ||  || | || |||||  |||||||||||| ||| ||||||||||
gtaagaactcaaaattgagcatcagcaattctatttttagatactgttcatagttaattgaatctaaaaataataaatttgtaaaatatattaatggcaaggaattcatcaagttctattcattttacattgccaataatagttaattcaaaagtatatttttg------ttgcatagGTTGTTCTTGGCATTAGCTCTTTCCTTATTGAACCCATGTGTCAGCGGATGGGGGCAAGGCTGGTTTGGGCCATGAGCAATTTTATTGTGTTTGCCTGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcaaaattcaattactcgcccgttattgaatattcttcttccctgtttccgtagGTTGTTCTTGGGATCAGCTCATTTCTCATTGAACCAATGTGTCAGCGGATGGGTGCTCGGGTTGTATGGGCTTTGAGCAATTTTACTGTATTTGCCTGCA
                               tattcttcttccctgt  CT-rich tract
                       ttattgaatattctt  TA-rich tract