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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtaatttaatccattaatgctctattcttgctttgcaatatggttattgatctaagactgaggtactgttgttacagATGGATGTATTCAACACATTCATTGATCTGTTGCGGCAAACGGGAAATGTTACAAAAGGTCAAACTGACACCGATGAATCAAG

Basic information

species Arabidopsis thaliana
transcript AT2G02560.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA07G40230.1 (Glycine max), 3'ss of exon 10
gtatgtaatttaatccattaatgctctattcttg--ctttgcaatatggttattgatctaagactgaggtactgttgttacagATGGATGTATTCAACACATTCATTGATCTGTTGCGGCAAACGGGAAATGTTACAAAAGGTCAAACTGACACCGA--TGAATCAAG
||||   |   ||   || |||  | | || ||   |||| ||  |     ||   |||   ||   | ||    |||| |||||||||||||| || || |||||||| || ||||| ||||| |||||||| |||||||| || || ||  | ||  |||  ||| 
gtat---acccaa---ataaatattttgtttttagtctttacagcaaaaggatgcttctttaacatggata----tgttgcagATGGATGTATTTAATACTTTCATTGAGCTCTTGCGTCAAACTGGAAATGTCACAAAAGGGCAGACAGATGCAGATATGAGGCAA-

upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA17G00570.1 (Glycine max), 3'ss of exon 9
--gtatgtaatttaatccattaatgctctattcttgctttgcaatatggttattgatctaagactgaggtactgttgttacagATGGATGTATTCAACACATTCATTGATCTGTTGCGGCAAACGGGAAATGTTACAAAAGGTCAAACTGACACCGATGAATCAAG----
   ||   || | |||   ||| |  | || ||||     |||| | ||||  |  | ||| || ||  |      ||| |||||||||||||| || || |||||||| || ||||| ||||| |||||||| |||||||| || | |||  | ||||||   ||    
gtatacccaaataaatattttatt--tgtaatctt-tacagcaaaaaggttgctcctttaacacggatat------gttgcagATGGATGTATTTAATACTTTCATTGAGCTCTTGCGTCAAACTGGAAATGTCACAAAAGGGCAGATTGATGCAGATGAAATGAGGCAA

upper sequence: AT2G02560.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 3'ss of exon 11
gtatgtaatttaatc-cattaatgc-tctattcttgctttgcaatatg-gttattgatctaagactgaggtactgttgttacagATGGATGTATTCAACACATTCATTGATCTGTTGCGGCAAACGGGAAATGTTACAAAAGGTCAAACTGACACCGATGAATCAAG
    ||||   ||     |||||   |  ||  ||| ||| |  |||   |  ||||||     |||   |  |  || | ||||||||||| ||||| ||||| ||||| ||  | || ||||| ||||||||||| ||||| || |||||||   |||||   ||
----gtaagccaaaaatgttaatttatagatatttgttttcctctatacatggttgatc---atctggttttttcatgattcagATGGATGTGTTCAATACATTTATTGAGCTACTACGCCAAACTGGAAATGTTACGAAAGGGCAGACTGACATGAATGAACTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattcttgctttgcaatatggttattgatctaagactgaggtactgttgttacagATGGATGTATTCAACACATTCATTGATCTGTTGCGGCAAACGGGAAATGTTACAAAAGGTCAAACTGACACCGATGAATCAAG
                      tattgat  putative branch site (score: 3)
                     ttattgat  TA-rich tract