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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagtagtggttctttaggttggtttacttaaaggtctagtctaaagacatatataaacctccattttatgttaacatgtcattgtttctcctattttcagAAGGTTAAATCATTCCAAGATCTTCAAGAAATGAGGTTGGAAGACCGTTCTGAACTACTTACTCAGGTAGCGGGTTTATCAGCAACTGATGTTGAGGACA

Basic information

species Arabidopsis thaliana
transcript AT1G79940.3
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116420065|gb|EG462657.1|EG462657
EST:     TACAGCTCCCTCATTTCAGTGATGCCGTTGTCAAAAAGATAGCACGGAAG                         AAGGTTAAATCATTCCAAGATCTTCAAGAAATGAGGTTGGAAGACCGTTCT
genomic: TACAGCTCCCTCATTTCAGTGATGCCGTTGTCAAAAAGATAGCACGGAAGgtatactact ... ctattttcagAAGGTTAAATCATTCCAAGATCTTCAAGAAATGAGGTTGGAAGACCGTTCT
EST: gi|86063136|gb|DR358893.1|DR358893
EST:     TACAGCTCCCTCATTTCAGTGATGCCGTTGTCAAAAAGATAGCACGGAAG                         AAGGTTAAATCATTCCAAGATCTTCAAGAAATGAGGTTGGAAGACCGTTCT
genomic: TACAGCTCCCTCATTTCAGTGATGCCGTTGTCAAAAAGATAGCACGGAAGgtatactact ... ctattttcagAAGGTTAAATCATTCCAAGATCTTCAAGAAATGAGGTTGGAAGACCGTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacatatataaacctccattttatgttaacatgtcattgtttctcctattttcagAAGGTTAAATCATTCCAAGATCTTCAAGAAATGAGGTTGGAAGACCGTTCTGAACTACTTACTCAGGTAGCGGGTTTATCAGCAACTGATGTTGAGGACA
                       tgttaac  putative branch site (score: 2)
                                    ttgtttctcctatttt  putative PPT
                 attttatgttaacat  TA-rich tract