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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcatcggtttttgttacatattccagttgtgtatcttttttttcttctgtctataatactttgggatgaccgttgagaatttggcagCCCCTACCCATGAGGTTGAACTTGAGGAAGAAAAGGGCCAGGGAAGGAAGATCTTCTGATGAGATTGAACACTTTCCAGTACCTTCAAGGGTAACTGTAA

Basic information

species Arabidopsis thaliana
transcript AT1G79730.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124847598|gb|EH932035.1|EH932035
EST:     ANCCTGGCACATACCTGGTATCATTTGACAATGGGACCGCTAGCTATCTG                         CCCCTACCCATGAGGTTGAA
genomic: ATCCTGGCACATACCTGGTATCATTTGACAATGGGACCGCTAGCTATCTGgtattgcatc ... aatttggcagCCCCTACCCATGAGGTTGAA
EST: gi|86058257|gb|DR354014.1|DR354014
EST:     ATCCTGGCACATACCTGGTATCATTTGACAATGGGACCGCTAGCTATCTG                         CCCCTACCCATGAGGTTGAACTTGAGGAAGAAAAGGGCCAGGGAAGGAAGA
genomic: ATCCTGGCACATACCTGGTATCATTTGACAATGGGACCGCTAGCTATCTGgtattgcatc ... aatttggcagCCCCTACCCATGAGGTTGAACTTGAGGAAGAAAAGGGCCAGGGAAGGAAGA
EST: gi|86058258|gb|DR354015.1|DR354015
EST:     ATCCTGGCACATACCTGGTATCATTTGACAATGGGACCGCTAGCTATCTG                         CCCCTACCCATGAGGTTGAACTTGAGGAAGAAAAGGGCCAGGGAAGGAAGA
genomic: ATCCTGGCACATACCTGGTATCATTTGACAATGGGACCGCTAGCTATCTGgtattgcatc ... aatttggcagCCCCTACCCATGAGGTTGAACTTGAGGAAGAAAAGGGCCAGGGAAGGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttttttttcttctgtctataatactttgggatgaccgttgagaatttggcagCCCCTACCCATGAGGTTGAACTTGAGGAAGAAAAGGGCCAGGGAAGGAAGATCTTCTGATGAGATTGAACACTTTCCAGTACCTTCAAGGGTAACTGTAA
                   tataatacttt  TA-rich tract