1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaagaatgatcaaggcgtattgttgttactgtatttactgcatatatgcgttatttttctggagttcctctcgtacaattatccttctcactcccatgccattttatttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGGATGTACGTCCAAGAATTCGGTTCTGAATGCGCATTTCCCAATCAACGCC
species | Arabidopsis thaliana |
transcript | AT1G79000.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAG GTAGTTCTGTTGTTTCAAAAGATTGAAG-CGTAGAAGTATGCTTATTTGGGEST: gi|116428303|gb|EG470895.1|EG470895
genomic: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAGgtaagaatga ... atttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGG
EST: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAG GTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGGEST: gi|116462330|gb|EG504922.1|EG504922
genomic: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAGgtaagaatga ... atttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGG
EST: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAG GTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGGEST: gi|116447334|gb|EG489926.1|EG489926
genomic: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAGgtaagaatga ... atttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGG
EST: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAG GTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGGEST: gi|116414729|gb|EG457321.1|EG457321
genomic: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAGgtaagaatga ... atttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGG
EST: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAG GTAGTTCTGTTGTTTCAAAAGATEST: gi|116455250|gb|EG497842.1|EG497842
genomic: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAGgtaagaatga ... atttttccagGTAGTTCTGTTGTTTCAAAAGAT
EST: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAG GTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGGEST: gi|116455249|gb|EG497841.1|EG497841
genomic: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAGgtaagaatga ... atttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGG
EST: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAG GTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGGEST: gi|116418401|gb|EG460993.1|EG460993
genomic: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAGgtaagaatga ... atttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGG
EST: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAG GTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGGEST: gi|116447332|gb|EG489924.1|EG489924
genomic: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAGgtaagaatga ... atttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGG
EST: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAG GTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGG
genomic: AAATTTTTCGGGAGGATAGTTACCCAACAGAATTTGCATACAAGTCCAAGgtaagaatga ... atttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGG
ggagttcctctcgtacaattatccttctcactcccatgccattttatttttccagGTAGTTCTGTTGTTTCAAAAGATTGAAGGCGTAGAAGTATGCTTATTTGGGATGTACGTCCAAGAATTCGGTTCTGAATGCGCATTTCCCAATCAACGCC
ttctcac putative branch site (score: 2)
ccattttatttttcc putative PPT
attttatttttcca TA-rich tract