1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttgtgtaatattgatgaaaacttcatataaatacattattcattgcataaaagaaatagtacctgtgggggtatgattgcgtttgcgtttggacgtacagGGGCCTGACGATTGTTAATGTTGGGTAACCTAAACCTCAATGGAGACTGATTCACCGATGTTTGCATACCGCCAT
species | Arabidopsis thaliana |
transcript | AT1G77950.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AAGAGAATGCATGTTATAAGACAAAAATAAACGAGATATCTCACAAATGG GGGCCTGACGATTGTTAATGTTGGGTAACCTAAACCTCAATGGAGACTGATEST: gi|116378441|gb|EG421033.1|EG421033
genomic: AAGAGAATGCATGTTATAAGACAAAAATAAACGAGATATCTCACAAATGGgtatgtacct ... ggacgtacagGGGCCTGACGATTGTTAATGTTGGGTAACCTAAACCTCAATGGAGACTGAT
EST: AAGAGAATGCATGTTATAAGACAAAAATAAACGAGATATCTCACAAATGG GGGCCTGACGATTGTTAATGTTGGGTAACCTAAACCTCAATGGAGACTGAT
genomic: AAGAGAATGCATGTTATAAGACAAAAATAAACGAGATATCTCACAAATGGgtatgtacct ... ggacgtacagGGGCCTGACGATTGTTAATGTTGGGTAACCTAAACCTCAATGGAGACTGAT
cataaaagaaatagtacctgtgggggtatgattgcgtttgcgtttggacgtacagGGGCCTGACGATTGTTAATGTTGGGTAACCTAAACCTCAATGGAGACTGATTCACCGATGTTTGCATACCGCCAT
aagaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtgtaatattgatgaaaacttcatataaatacattattcattgcataaaagaaatagtacctgtgggggtatgattgcgtttgcgtttggacgtacagGGGCCTGACGATTGTTAATGTTGGGTAACCTAAACCTCAATGGAGACTGATTCACCGATGTTTGCATACCGCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - -gaaaact
- - - - - - - - - - - - - - aaataca
- - - - - - - - - - - - - - - - - - - - - - - - aaaagaa