1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacaaggaaaggggagaaaatctaatatctatgcacttgtgtataccattataaaccatacgtttaaaatccagttcagtgacttaaaatctaaaactgctaatgtgtcactatgaaactaatcagGGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCTACGGGAAAG
species | Arabidopsis thaliana |
transcript | AT1G77490.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CATGCCAAGCTTAGCAATCTCGGTGCAAAATTTGATCCTCCCGAG GGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCTEST: gi|86085503|gb|DR381262.1|DR381262
genomic: CATGCCAAGCTTAGCAATCTCGGTGCAAAATTTGATCCTCCCGAGgtacaaggaa ... aactaatcagGGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCT
EST: AAGCCCATGCCAAGCTTAGCAATCTCGGTGCAAAATTTGATCCTCCCGAG GGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCTEST: gi|86085139|gb|DR380898.1|DR380898
genomic: AAGCCCATGCCAAGCTTAGCAATCTCGGTGCAAAATTTGATCCTCCCGAGgtacaaggaa ... aactaatcagGGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCT
EST: AAGCCCATGCCAAGCTTAGCAATCTCGGTGCAAAATTTGATCCTCCCGAG GGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCTEST: gi|164045549|gb|ES006578.1|ES006578
genomic: AAGCCCATGCCAAGCTTAGCAATCTCGGTGCAAAATTTGATCCTCCCGAGgtacaaggaa ... aactaatcagGGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCT
EST: CGGTGCAAAATTTGATCCTCCCGAG GGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCT
genomic: CGGTGCAAAATTTGATCCTCCCGAGgtacaaggaa ... aactaatcagGGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCT
cagttcagtgacttaaaatctaaaactgctaatgtgtcactatgaaactaatcagGGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCTACGGGAAAG
tgctaat putative branch site (score: 2)
acttaaaatctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaaggaaaggggagaaaatctaatatctatgcacttgtgtataccattataaaccatacgtttaaaatccagttcagtgacttaaaatctaaaactgctaatgtgtcactatgaaactaatcagGGCATAGTCATTGAAAACGTTCCAGAGAAGTTCGTAGCTGCAAAGTATTCTACGGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG