Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaagcattgttttgcagagtcactgtttctcttttctaatcattgctatggaaattttcggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTTCTTTTACATCGAAACTTCATGACACTTCGACAAGTATTGATCCAACGGT

Basic information

species Arabidopsis thaliana
transcript AT1G73020.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73020.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA07G01550.1 (Glycine max), 3'ss of exon 9
gtaa-gaaaagcattgtt--ttgcagagtcactgttt---ctcttttctaatcattg---ctatggaaattttcggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTTCTTTTACATCGAAACTTCATGACACTTCGACAAGTATTGATCCAACGGT
|||| ||   | |||  |   | |   ||   | |||   || | | |||| |||||    || ||   |  |        ||||| ||||| || || |||||||||||||| ||||| |||||||||||||   | || ||||| || ||    || ||||| ||||| ||||| || ||  
gtaatgatggggattaatagataccatgttgtttttttcactttatcctaaacattgaacttaggggtttactttctcccacagGTGTTTGGTCTGTACTTTATGCAGACATACATTGGAATCTTTTATCATGCCTTGTTGCATCGTAATTTTTCAACTCTTCGCCAAGTGTTGATTCAGCGAC

upper sequence: AT1G73020.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA08G20980.2 (Glycine max), 3'ss of exon 10
gtaa-gaaaagcattgttttgca--gagtcactgtttctc----ttttctaatcattg---ctatggaaattttcggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTTCTTTTACATCGAAACTTCATGACACTTCGACAAGTATTGATCCAACGGT
|||| |    | |||| |  | |    ||  || ||| ||    | | |||| | |||   ||| ||   |  |     | |||||| ||||| || || || ||||||||||| ||||| |||||||||||||   | || ||||| || ||    || ||||| ||||| ||||| || ||| 
gtaatggcgcggattgataggtaccatgttgctttttttcaccttatcctaaacgttgaacctaggggtttactttctctcgcagGTGTTTGGTCTGTACTTCATGCAGACATACATTGGAATCTTTTATCATGCCTTGTTGCATCGTAATTTTTCAACTCTTCGCCAAGTGTTGATTCAGCGGC

upper sequence: AT1G73020.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv09s0002g02590.t01 (Vitis vinifera), 3'ss of exon 9
---------------gtaagaaaagcattgttttgcagagtcactgtttc--tcttttctaatcattgctatggaaattt--tcggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTTCTTTTACATCGAAACTTCATGACACTTCGACAAGTATTGATCCAACGGT
                |    |   |||| | ||   |    ||  | |   |||     | |  |   ||    |||||  |     || ||||| ||||| || ||||| |||||| ||||||||||| |||| |||||| | |||||||| ||  |||| |  || ||||| ||||| ||||| || ||  
gtaatgggcaggaatttgtacatgccattttatttttgttctaccctctgagtctgggtaatttctctttaaaacaatttactttctcttccagGTATTTGGTCTTTATTTCATGCAGTCATATATTGGGGTCTTCTATCATATCCTTTTACACCGTGACTTTAAAACCCTTCGCCAAGTCTTGATTCAGCGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116436471|gb|EG479063.1|EG479063
EST:     AATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: AATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423940|gb|EG466532.1|EG466532
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423946|gb|EG466538.1|EG466538
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116435865|gb|EG478457.1|EG478457
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436463|gb|EG479055.1|EG479055
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTAATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116435910|gb|EG478502.1|EG478502
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436478|gb|EG479070.1|EG479070
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436399|gb|EG478991.1|EG478991
EST:     GAGAAATCGACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436349|gb|EG478941.1|EG478941
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436465|gb|EG479057.1|EG479057
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTAATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423949|gb|EG466541.1|EG466541
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423860|gb|EG466452.1|EG466452
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423780|gb|EG466372.1|EG466372
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436460|gb|EG479052.1|EG479052
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436362|gb|EG478954.1|EG478954
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436484|gb|EG479076.1|EG479076
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436480|gb|EG479072.1|EG479072
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436488|gb|EG479080.1|EG479080
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436474|gb|EG479066.1|EG479066
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116435879|gb|EG478471.1|EG478471
EST:     GTGGAGTACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436397|gb|EG478989.1|EG478989
EST:     GAGAAATCGACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436404|gb|EG478996.1|EG478996
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423711|gb|EG466303.1|EG466303
EST:     GTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436467|gb|EG479059.1|EG479059
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423947|gb|EG466539.1|EG466539
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436479|gb|EG479071.1|EG479071
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436359|gb|EG478951.1|EG478951
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTATATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423849|gb|EG466441.1|EG466441
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436468|gb|EG479060.1|EG479060
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436486|gb|EG479078.1|EG479078
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116457871|gb|EG500463.1|EG500463
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116436469|gb|EG479061.1|EG479061
EST:     TGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: TGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
EST: gi|116423941|gb|EG466533.1|EG466533
EST:     GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAA                         GTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT
genomic: GAGAAATCAACGAGAGTGTGGAATACCGAGCTAACAGCTTGATTTACAAAgtaagaaaag ... ggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagagtcactgtttctcttttctaatcattgctatggaaattttcggcattgcagGTTTTTGGGCTCTATTTTATGCAGACATATATTGGGATCTTTTATCATGTTCTTTTACATCGAAACTTCATGACACTTCGACAAGTATTGATCCAACGGT
                   ttctaat  putative branch site (score: 2)
                 ttttctaat  TA-rich tract