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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctaatcactggatcaggtttcagagctttttattgcattccttctcttacctggtgacgcgatttgaaacttttctcagATAACTACTGAAGTAGCACTGGCTATGCTATCTATTGCAACGGTTCTAGTCATTGTCCCTTTCAAGTATGTTCTGGCTTTTGTTCTCTACGATCAATTTA

Basic information

species Arabidopsis thaliana
transcript AT1G71240.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19797426|gb|AU229262.1|AU229262
EST:     ATTGTATTATCTGGTCATCCTCAG                         ATAACTACTGAAGTAGCACTGGCTATGCTATCTATTGCAACGGTTCTAGTC
genomic: ATTGTATTATCTGGTCATCCTCAGgtatgttcta ... cttttctcagATAACTACTGAAGTAGCACTGGCTATGCTATCTATTGCAACGGTTCTAGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttttattgcattccttctcttacctggtgacgcgatttgaaacttttctcagATAACTACTGAAGTAGCACTGGCTATGCTATCTATTGCAACGGTTCTAGTCATTGTCCCTTTCAAGTATGTTCTGGCTTTTGTTCTCTACGATCAATTTA
                   ctcttac  putative branch site (score: 3)
                                             cttttctc  putative PPT
                                     atttgaaa  TA-rich tract