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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactagtgcaggatacatatgatttatttgtgaggatacatatgatttatttgtaggcaaggtgccatctggaaaataaaatatctaatggcctgtgttcctctcaccttgtaataagATTTTGATGCCTGCCTTCCCTGGACAACTACGTTACATCCGAAAGAACCTATTCCATGCAGTTTACGTCATTGATCCAGCGACTGCCTGTGGTCTTGAG

Basic information

species Arabidopsis thaliana
transcript AT1G71220.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71220.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA08G13400.1 (Glycine max), 3'ss of exon 11
gt-aactagtgca---ggatacatatgatttatt-tgtgaggatacat-atgatttatttgtaggcaagg---tgccatctggaaaata--aaatatctaa--tggcctg---tgttcctctcaccttgtaataagATTTTGATGCCTGCCTTCCCTGGACAACTACGTTACATCCGAAAGAACCTATTCCATGCAGTTTACGTCATTGATCCAGCGACTGCCTGTGGTCTTGAG-
|| || |||||     ||||     | |||| || | | |  | | || || ||  |  |||     ||    | |   ||| ||||    ||| || ||      |||    | ||   |     || |  | |||| |||||||| | ||||||||| || |||||||||||||| || ||||| |||||||| || |  ||  |||| ||||| ||    |||||||| ||| 
gtgaattagtgtgtttggattagctttattttttgtattaaaaaatattataatcaaagtgttcaggagatttttctggctgaaaaacggtaaaaatttagcccaacctaacatattttacatttgttttgcttagATCTTGATGCCAGTCTTCCCTGGGCAGCTACGTTACATCCGTAAAAACCTTTTCCATGCTGTCTTTGTTCTTGACCCAGCAACCCGTTGTGGTCTGGAGG

upper sequence: AT1G71220.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv12s0034g02230.t01 (Vitis vinifera), 3'ss of exon 11
gtaactagtgcaggatacatatgatttatttgtgaggatacatatgatttatttgtaggcaaggtgccatctggaaaataaaatatctaatggcctgtgttcct-ctcaccttgtaataagATTTTGATGCCTGCCTTCCCTGGACAACTACGTTACATCCGAAAGAACCTATTCCATGCAGTTTACGTCATTGATCCAGCGACTGCCTGTGGTCTTGAG
                   ||  | || ||         | |  || ||||| || ||  | |    | | ||    ||    | |||     | |   |||   |||  |||  |  ||||| |||||||| |  |||||||| ||| ||||||||||||| |||||  | |||||||||||||| ||  ||||||| ||  | |  ||||| ||||||
------------------gtacaagtttttca----atcatagttgttttatgtgaagatatg----cttttgatggatt---tctctggaaacatactttctaactcgtctttgatgaagATCTTGATGCCAGTTTTCCCTGGCCAATTACGTTACATCCGCAAGAATTTGTTCCATGCAGTTTATGTTCTTGATCCTGCCTCAGTTTGTGGACTTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccatctggaaaataaaatatctaatggcctgtgttcctctcaccttgtaataagATTTTGATGCCTGCCTTCCCTGGACAACTACGTTACATCCGAAAGAACCTATTCCATGCAGTTTACGTCATTGATCCAGCGACTGCCTGTGGTCTTGAG
                                     ctctcac  putative branch site (score: 3)
                                tgttcctctcacctt  CT-rich tract
         aaaataaaatatctaa  TA-rich tract