1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatctaacaatgttgaatatctttgtctatttttatgatcaaattgcgattttagcaatcagactaagcttggtgttcgatattctgcagAGCTGCTGGCCGAAGTGGGTTAACAAGGAGTACACAATGAGATGAGGGAGGAGATGTGACTAGTTCTTGTGGTCGTATCAGTTTAAACAAGTAAAACCGT
species | Arabidopsis thaliana |
transcript | AT1G68060.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAAACACCAAACCCTCATCCAACACCGCCCAGATTCTTGCTGCAAG AGCTGCTGGCCGAAGTGGGTTAACAAGGAGTACACAATGAGATGAGGGAGGEST: gi|164069049|gb|ES148902.1|ES148902
genomic: TCTTCAAACACCAAACCCTCATCCAACACCGCCCAGATTCTTGCTGCAAGgtatctaaca ... tattctgcagAGCTGCTGGCCGAAGTGGGTTAACAAGGAGTACACAATGAGATGAGGGAGG
EST: TTCAAACACCAAACCCTCATCCAACACCGCCCAGATTCTTGCTGACAAAG AGCTGCTGGCCGAAGTGGGTTAACAAGGAEST: gi|124774074|gb|EH864203.1|EH864203
genomic: TTCAAACACCAAACCCTCATCCAACACCGCCCAGATTCTTGCTG-CAA-Ggtatctaaca ... tattctgcagAGCTGCTGGCCGAAGTGGGTTAACAAGGA
EST: TCTTCAAACACCAAACCCTCATCCAACACCGCCCAGATTCTTGCTGCAAG AGCTGCTGGCCGAAGTGGGTTAACAAGGAGTACACAA
genomic: TCTTCAAACACCAAACCCTCATCCAACACCGCCCAGATTCTTGCTGCAAGgtatctaaca ... tattctgcagAGCTGCTGGCCGAAGTGGGTTAACAAGGAGTACACAA
tgatcaaattgcgattttagcaatcagactaagcttggtgttcgatattctgcagAGCTGCTGGCCGAAGTGGGTTAACAAGGAGTACACAATGAGATGAGGGAGGAGATGTGACTAGTTCTTGTGGTCGTATCAGTTTAAACAAGTAAAACCGT
atttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctaacaatgttgaatatctttgtctatttttatgatcaaattgcgattttagcaatcagactaagcttggtgttcgatattctgcagAGCTGCTGGCCGAAGTGGGTTAACAAGGAGTACACAATGAGATGAGGGAGGAGATGTGACTAGTTCTTGTGGTCGTATCAGTTTAAACAAGTAAAACCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG