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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgaaaaaattgactccgactacgtttaaattttttgaaacccaatatagagttgagtgcgtctctgaactgtgtgtttcaatttgtggtctgttccagTGAGTCGTAGACATGTTTGGGGGTTGAGAAGGGTGAGTCTAATCCAGCGGGTGTCGTAATGTCAGTCAATGTCTCGTCAGGTCAGGTCGTCCATGTTGCT

Basic information

species Arabidopsis thaliana
transcript AT1G67325.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19797230|gb|AU229156.1|AU229156
EST:     GGGATCGGTCGAATGGATCTCCGTCCCGTGCACCAGAAGAGAACGATCAG                         TGAGTCGTAGACATGTTTGGGGGTTGAGAAGGGTGAGTCTAATCCAGCGGG
genomic: GGGATCGGTCGAATGGATCTCCGTCCCGTGCACCAGAAGAGAACGATCAGgtttgtaaga ... tctgttccagTGAGTCGTAGACATGTTTGGGGGTTGAGAAGGGTGAGTCTAATCCAGCGGG
EST: gi|116485681|gb|EG528273.1|EG528273
EST:     GGGATCGGTCGAATGGATCTCCGTCCCGTGCACCAGAAGAGAACGATCAG                         TGAGTCGTAGACATGTTTGGGGGTTGAGAAGGGTGAGTCTAATCCAGCGGG
genomic: GGGATCGGTCGAATGGATCTCCGTCCCGTGCACCAGAAGAGAACGATCAGgtttgtaaga ... tctgttccagTGAGTCGTAGACATGTTTGGGGGTTGAGAAGGGTGAGTCTAATCCAGCGGG
EST: gi|116485680|gb|EG528272.1|EG528272
EST:     GGGATCGGTCGAATGGATTTCCGTCCCGTGCACCAGAAGAGAACGATCAG                         TGAGTCGTAGACATGTTTGGGGGTTGAGAAGGGTGAGTTTAATCCAGCGGG
genomic: GGGATCGGTCGAATGGATCTCCGTCCCGTGCACCAGAAGAGAACGATCAGgtttgtaaga ... tctgttccagTGAGTCGTAGACATGTTTGGGGGTTGAGAAGGGTGAGTCTAATCCAGCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatagagttgagtgcgtctctgaactgtgtgtttcaatttgtggtctgttccagTGAGTCGTAGACATGTTTGGGGGTTGAGAAGGGTGAGTCTAATCCAGCGGGTGTCGTAATGTCAGTCAATGTCTCGTCAGGTCAGGTCGTCCATGTTGCT
                                             tctgttcc  CT-rich tract
                                tttcaattt  TA-rich tract