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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcattcttccgccatttttggttgattctgcatttgcaacttgctaaaatgcttgtggttggtactcgcagGTGTGGTCATATGTGCTGCTGCACCGCATGCTCCTCCCACTTGACCAGCTGTCCACTTTGTCGGAGACGAATAGATCTGGCGGTTAAGACATATCGTCAC

Basic information

species Arabidopsis thaliana
transcript AT1G63900.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164085843|gb|ES167293.1|ES167293
EST:     GATATGCCTAGAGCAGGAGTACAACGCTGTGTTTGTCCC                         GTGTGGTCATATGTGCTGCTGCACCGCATGCTCCTCCCACTTGACCAGC
genomic: GATATGCCTAGAGCAGGAGTACAACGCTGTGTTTGTCCCgtaagcattc ... gtactcgcagGTGTGGTCATATGTGCTGCTGCACCGCATGCTCCTCCCACTTGACCAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggttgattctgcatttgcaacttgctaaaatgcttgtggttggtactcgcagGTGTGGTCATATGTGCTGCTGCACCGCATGCTCCTCCCACTTGACCAGCTGTCCACTTTGTCGGAGACGAATAGATCTGGCGGTTAAGACATATCGTCAC
                         tgctaaa  putative branch site (score: 2)
                            taaaat  TA-rich tract