1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...gtccaagaatgataagcaaactgctgaaggaattgagctgctttctacgtcaagtgagatctgtttagctgatctagactgatatttgctttgatggcagCTGCCGCCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAAAGTTTGGTGCGCCAAACAGAACTGACTGCTCAGTTATGTTCCATTACACGAGAAG
species | Arabidopsis thaliana |
transcript | AT1G60490.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CCAAGAGATTTTACAGTACATATGAGTTACTCGAGGAGAATATAATCAAG CTGCCGCCTGGTGTTAACGGCGAAGEST: gi|116469041|gb|EG511633.1|EG511633
genomic: CCAAGAGATTTTACAGTACATATGAGTTACTCGAGGAGAATATAATCAAGgtgtggacct ... ttgatggcagCTGCCGCCTGGTGTTAACGGCGAAG
EST: CCAAGAGATTTTACAGTACATATGAGTTACTCGAGGAGAATATAATCAAG CTGCCGCCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAAAGTTTGEST: gi|116411922|gb|EG454514.1|EG454514
genomic: CCAAGAGATTTTACAGTACATATGAGTTACTCGAGGAGAATATAATCAAGgtgtggacct ... ttgatggcagCTGCCGCCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAAAGTTTG
EST: CCAAGAGATTTTACAGTACATATGAGTTACTCGAGGAGAATATAATCAAG CTGCCGCCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAAAGTTTG
genomic: CCAAGAGATTTTACAGTACATATGAGTTACTCGAGGAGAATATAATCAAGgtgtggacct ... ttgatggcagCTGCCGCCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAAAGTTTG
tacgtcaagtgagatctgtttagctgatctagactgatatttgctttgatggcagCTGCCGCCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAAAGTTTGGTGCGCCAAACAGAACTGACTGCTCAGTTATGTTCCATTACACGAGAAG
tttgcttt CT-rich tract
tgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccaagaatgataagcaaactgctgaaggaattgagctgctttctacgtcaagtgagatctgtttagctgatctagactgatatttgctttgatggcagCTGCCGCCTGGTGTTAACGGCGAAGATGGATATCAATTGTGGCAAAGTTTGGTGCGCCAAACAGAACTGACTGCTCAGTTATGTTCCATTACACGAGAAG
- -caagaat
- - - - - - -aagcaaa
- - - - - - - - - - - - -gaaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatct