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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttcttctctttttgatttagttccctttcttggttttatcaactcttagtttatttggtcaatacatttgttggtgcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAATGCACCAAGACGCACTT

Basic information

species Arabidopsis thaliana
transcript AT1G58350.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G58350.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA08G19570.1 (Glycine max), 3'ss of exon 11
---gtttgttcttctctttttgatt-tagttccctttcttggttttatcaactcttagtttatttggtcaatacatttgttggtgcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAATGCACCAAGACGCACTT
     | ||| ||  ||   || || || ||     | ||| ||||        || || | ||| |||| ||||  | |   ||||||| ||||| || ||| | ||||||||| ||||| ||||||||||| |||| ||||||||| ||||  |||||||  |    ||        |     |  
gtatgtagttgtttactgaatgtttataattataacttttgtttttcctgctgatttgtattttttgtca-tacaaat-tccatgcagATCAACAATCGGTCACTTCAAGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTTGAACGCTTGGAAAACATGTACCGTTCTGCCA

upper sequence: AT1G58350.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA17G26570.1 (Glycine max), 3'ss of exon 10
--------gtttgttcttctctttttgatttagttcc----ctttcttggttttatc--aactcttagtttat--ttggtcaatacatttgttggtgcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAATGCACCAAGACGCACTT
          ||   | | |  ||||||     ||||    | | | |     ||||  |||  || |  |||      | |||  |||   |  |||||||||||||||| ||||| ||||||||||||||| | || ||||||    |  | || ||||| ||  ||||||||||  ||||||||||| | || ||| 
atataatctcttaaccatttaattttgagaccattcctggacctccctaagcctatcctaacaatttgcatatggcctattaatggattcaattttgcagATTAACAACCGGTCAATTCAAGACATGCATATATTCGGTGATCCTTCAAGCATACCAATTGTCATTGTTGAACGTGTGATGAATGCACCACGTCGGACTA

upper sequence: AT1G58350.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA06G09480.1 (Glycine max), 3'ss of exon 10
gtttgttcttctctttttgatttagttccctttcttggttttatcaactcttagtttatttggtcaatac-atttgttggt--gcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAATGCACCAAGACGCACTT
                 | || ||    | |   |  ||   ||  ||   | |  ||||     ||||    |   || |  ||||||||||||||| ||| | ||||||||||| ||| |||||||||   |||    ||| ||||| ||  |||||| |||  |||||| |||  | |    | 
----------------gtaatctatcaacttgaatatgtgacatttacatatggcctattaacaaaatattgatcactgctttgcagATTAACAACCGCTCAGTTCAAGACATGCAGATATTTGGAGATCTCTTGCATACTCCAATTGTGATTGTTGAACATGTGATGAATGTACCCCGTCATTGTC

upper sequence: AT1G58350.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA15G05480.1 (Glycine max), 3'ss of exon 13
--gtttgttcttctctttttgatt-----tagttccctttcttggttttatcaactcttagtttatttggtcaatacatttgttggtgcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAATGCACCAAGACGCACTT
    | ||| ||  | | | || |     || ||     | ||| |||| |      || || | ||| |||| ||||  | |  |||||||| ||| |||| ||| | || |||||| ||||| ||||||||||| |||| ||||||||| ||||  | ||| |  |    ||    |   |     |  
gtaatagttgtttacatatggaatgcttataattataacttttgtttttcttgctgatttgtattttttgtca-tacaaat-tccgtgcagATCAACGACCGGTCACTTCAGGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTAGAATGCTTGGAAAACATGCACCGTTCTGCCA

upper sequence: AT1G58350.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA08G08190.1 (Glycine max), 3'ss of exon 11
--gtttgttcttctctttttgatttagttccc--tttcttggttttatcaactcttagtttatttggtcaatacatttgttggtgcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAA--TGCACCAAGACGCACTT
     || |  | | ||| ||   |  ||     | |  | |||||  |         |||||    |   |  || |     ||||||| ||||| || ||| | ||||| ||| ||||| ||||||||||| ||| |||||||||| ||||  | |||||  |    ||  || ||||    ||    
gtaagtgattgtatttttctggagtgctttgtaatcttatagttttggctgactgggatttatgacatatgtgaatctc---atgcagATCAACAATCGGTCACTTCAAGATATGTATATATTTGGAGATCCTCTGCTGGTTCCTATTATTATTGTAGAACGCTTGACAAACGTGTACCATTCTGCCA--

upper sequence: AT1G58350.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 9
gtttgttcttctctttttgatttagttccctttcttggttttatcaactcttagtttatttggtcaatacatttgttggtgcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAATGCACCAAGACGCACTT
  |   |  |  || |   |   ||     |    |  |      |  |   || |||  ||  ||      || |   ||||||| |||||||  ||||| ||||||||||| ||| |||||||||||   ||  |||||||| | ||  | ||||||||  ||||||  ||| | || ||| 
-gtgacttattactatcacacggagcattatccaatattccatatagattggagctta--tgaacagacatcttttccatgcagATCAACAACCAGTCAATTCAAGACATGCACATATTTGGAGATCCTTCCCGTATTCCTATTATAATTGTAGAACGTGTTGTGAATGTGCCACGGCGTACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcttggttttatcaactcttagtttatttggtcaatacatttgttggtgcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAATGCACCAAGACGCACTT
                     ttagtttattt  TA-rich tract