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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacaaaataatggctagttgaaagttgataatgtttgtcaaactctagttcgatttgataatgtttttcgttgtttaaagttttgataaatttccgcaaatgtgctagttgtgatttaatcccaattgttattgatgtttgtataaaccaaaacagGGTATTGCAGTAGCTGTGGGAGATTGGTATTTCGAAAGAGGAGGAGCAAAGCTCATAGACTGTGCTTATCCTTGTGACAAGACTTGTCACAATTTGGTCT

Basic information

species Arabidopsis thaliana
transcript AT1G57590.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084090|gb|DR379849.1|DR379849
EST:     AGAGGCATGACACTTGGTTCGCCCAAAACTCTCCAGCTATTAAGAACAAG                         GGTATTGCAGTAGCTGTGGGAGATTGGTATTTCGAAAGAGGAGGAGCAAAG
genomic: AGAGGCATGACACTTGGTTCGCCCAAAACTCTCCAGCTATTAAGAACAAGgtaagacaaa ... accaaaacagGGTATTGCAGTAGCTGTGGGAGATTGGTATTTCGAAAGAGGAGGAGCAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgctagttgtgatttaatcccaattgttattgatgtttgtataaaccaaaacagGGTATTGCAGTAGCTGTGGGAGATTGGTATTTCGAAAGAGGAGGAGCAAAGCTCATAGACTGTGCTTATCCTTGTGACAAGACTTGTCACAATTTGGTCT
                            tattgat  putative branch site (score: 3)
                      aattgttatt  TA-rich tract